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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi23g00167 ATGGCTTCTTTTCCTTCTTCAAGTTGGAGCTTCATCTTCTATGCTCTATTGCTCATACAAATTTGTGGTGCGCGTGAAATCGTTGAAAAAAGCCCAAAAACCGATCACAATGACGAAAATCATATAAGTATTTACGGGAAGAATGAAGTTCATGATTTGGATCCGGCTCTAAATGTGTTCTTTCATGTAAATGATTTATATTCGGGTAAAAAAATGCCAATTTATTTCGCGGTTAACGATCCTTCAACGACTCCTAGGTTGTTAACACGAGAACAATCCGACACGATACCATTTTCGTCTCAAAAACTCGGTTATCTTCTCGAGCTTATATCGTTAGCCGAGGGGTCGCCGCAAGCCCGAGCCATGGAACAAACACTTAAACAGTGTGAGCTTGAGGCCACCCCTGGTGAGACAAGGTTTTGTGCTAGCTCCTTAGAGTCAATGGTTGACCTGACACGTGGCATGTTGGGTGTGGTCAAACTAAAGGCGTTGACCACCAATATTCATAATTTGTCAAATACTATTTTGCAAGGGTATACCTTTTTGAAGGAGCCAATGGAGATTAATGTTTCTGATATGGTGGCTTGTCACACCATGGCTTATCCTTATGCTGTTTATTATTGTCATGGTCAAAAGGGGTATAATAGGGTTTTTGAGATTTCTTTAGGGGGTGAAAATGGAAATATAGTCGATGCTATCGCGGTTTGCCACATGGACACTTCCATGTGGGATAGTGATCACGTGGCGTTTCGTGTGCTCGGAGGCCAGCCTGGCAGCTCGCCGGTGTGCCATTTCCTCCCGGCCGATAATGTCGTGTGGATACCATCACCGTAG 834 43.76 MASFPSSSWSFIFYALLLIQICGAREIVEKSPKTDHNDENHISIYGKNEVHDLDPALNVFFHVNDLYSGKKMPIYFAVNDPSTTPRLLTREQSDTIPFSSQKLGYLLELISLAEGSPQARAMEQTLKQCELEATPGETRFCASSLESMVDLTRGMLGVVKLKALTTNIHNLSNTILQGYTFLKEPMEINVSDMVACHTMAYPYAVYYCHGQKGYNRVFEISLGGENGNIVDAIAVCHMDTSMWDSDHVAFRVLGGQPGSSPVCHFLPADNVVWIPSP 277
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi23g00167 277 PANTHER BURP DOMAIN PROTEIN USPL1-LIKE 41 276 IPR044816 -
Dapi23g00167 277 SMART BURP-2 58 276 IPR004873 -
Dapi23g00167 277 ProSiteProfiles BURP domain profile. 60 276 IPR004873 -
Dapi23g00167 277 Pfam BURP domain 59 274 IPR004873 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi23g00167 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
73952 Dapi12g01196 Dapi23g00167
79332 Dapi23g00167 Dapi28g01125
251559 Dapi7g00150 Dapi23g00167
386952 Dapi23g00167 Dapi7g00150
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr12:92005974 Dapi23g00167 Dapi-Chr23:3667807 dispersed
Dapi Dapi-Chr16:81511140 Dapi23g00167 Dapi-Chr23:3667807 dispersed
Dapi Dapi-Chr23:3667807 Dapi7g00150 Dapi-Chr7:3137737 dispersed
Dapi Dapi-Chr23:3611890 Dapi23g00167 Dapi-Chr23:3667807 proximal