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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi23g00179 ATGGATGAAATACCAGGATCAACCGGGACCAGTGCAGGGTTTGCTCTGAGGCTCGGCCAAATCATCTTCTCGACCGCTTCGCTCTTGTTCATGTTGCTCGGCGTTCAGTTTTACAGTTACACATCCTTCTGCTTCTTGGTGACAATTATGGGTTTGGTTATTCCATGGAGTTTTGCATTAGCATTGCTTGATGGATATTCGGTTATTGTAACGTGCCCGATTCGACAAAAGGGGATATTGTTCATAATTGTTGTAGGAGATTGGTTGTTATCGACGCTAGCACTAGCTGCCGCTTGTTCTGCCGCCAGCGTGGTGGAGGTCTTGGTGACGGCGGATGGGTCGGTCTGCCTTCCGAAAATGTGTAGCCGGTATTTGATTTCGACTGTGTTTGCTTTCTTGTCATGGTTTTTGTCTATGGCTTCTTCTTTGTTTAATATGTGGATTCTTCCATCTTTGTGA 459 45.97 MDEIPGSTGTSAGFALRLGQIIFSTASLLFMLLGVQFYSYTSFCFLVTIMGLVIPWSFALALLDGYSVIVTCPIRQKGILFIIVVGDWLLSTLALAAACSAASVVEVLVTADGSVCLPKMCSRYLISTVFAFLSWFLSMASSLFNMWILPSL 152
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi23g00179 152 PANTHER CASP-LIKE PROTEIN 5B3 1 151 IPR045009 GO:0016020(PANTHER)
Dapi23g00179 152 Pfam Casparian strip membrane protein domain 8 137 IPR006702 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi23g00179 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
251568 Dapi7g00162 Dapi23g00179
386961 Dapi23g00179 Dapi7g00162
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr10:25994782 Dapi23g00179 Dapi-Chr23:3771167 dispersed
Dapi Dapi-Chr13:16374466 Dapi23g00179 Dapi-Chr23:3771167 dispersed
Dapi Dapi-Chr14:18319270 Dapi23g00179 Dapi-Chr23:3771167 dispersed
Dapi Dapi-Chr23:3771167 Dapi30g00916 Dapi-Chr30:17888535 dispersed
Dapi Dapi-Chr23:3771167 Dapi7g00162 Dapi-Chr7:3271376 wgd