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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi23g00203 ATGAATCCTGGGAGTTTGTCTTTTAACACCGGTGAACCCCAAATCCAGCTGTACTTCTTACTTGGACTTGTTTATGCTGTTGTCACCCCGATTCTGCTTCCTTTTATAGTTGTGTTCTTTGGATTGGCTTATGTCGTATACCGTCATCAGATTATAAATGTGTATAATCAGCAATACGAGAGTGCAGGAGCTTTTTGGCCCGATGTTCATGGGCGGATCATAACTGCACTGATTGTTTCACAGTTGCTTTTGATGGGTTTGCTTAGCACAAAAGCGGCTGCTCAGTCAACTCCATTGCTTATTGTACTCCCGGTTTTGACCATTTGGTTTCATAGATTCTGCAAGGGCCGGTTTGAACCCGCTTTTGTTAGGTTCCCTTTACAGGAGGCTATGATGAAAGACACACTAGAACGTGCACGGGAGCCATGTTTAAATGTGAAGGACTATTTAGAAAAAGCGTATGCTCACCCGGTCTTTAATAATGAAAACAAATGGGATGGTAGTGATGATGGAGTTAGTGATGATGAGTTGCCCAAAGAACCCACTCTGGTTGCCACAAAACGTTCATCAAGAACAACCACACCAGCCCGAAGTCAACGGAGCGAGTCAACCCAAACATTGTTATGTGTTACAGACGAAAGGTCTTGTCCCTAA 654 43.73 MNPGSLSFNTGEPQIQLYFLLGLVYAVVTPILLPFIVVFFGLAYVVYRHQIINVYNQQYESAGAFWPDVHGRIITALIVSQLLLMGLLSTKAAAQSTPLLIVLPVLTIWFHRFCKGRFEPAFVRFPLQEAMMKDTLERAREPCLNVKDYLEKAYAHPVFNNENKWDGSDDGVSDDELPKEPTLVATKRSSRTTTPARSQRSESTQTLLCVTDERSCP 217
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi23g00203 217 MobiDBLite consensus disorder prediction 165 217 - -
Dapi23g00203 217 MobiDBLite consensus disorder prediction 185 217 - -
Dapi23g00203 217 MobiDBLite consensus disorder prediction 167 182 - -
Dapi23g00203 217 Pfam Calcium-dependent channel, 7TM region, putative phosphate 2 88 IPR003864 GO:0016020(InterPro)
Dapi23g00203 217 PANTHER PROBABLE MEMBRANE PROTEIN DUF221-RELATED 2 169 IPR045122 GO:0005227(PANTHER)|GO:0005227(InterPro)|GO:0005886(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi23g00203 K21989 calcium permeable stress-gated cation channel
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr23:4127412 Dapi5g01529 Dapi-Chr5:104509287 dispersed
Dapi Dapi-Chr23:4127412 Dapi7g00180 Dapi-Chr7:3577895 wgd