AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi23g00220 ATGTCACCAGTAATCATATACCCAATTCTTATATTATCCCTACTTATTATTCCCCCAAACCCAACCGCCGCCGATCAATCATCCATCTCAGTCCTCATAACCCAAACCGGCCTTGATTTCGTCAAGAATTTGCTTGTAACAAAAGCTATTTCTAAAATCACTCCAACCCCAATTTCTGGAATTGACAAGGCTGTTGAAATTCCTCTAATTGGTAAAGTTCATATTGTTCTTTCGAACATTACTATTTACCGGTTCGATGTCGGGTTGTCGCAGGTTATACCCAATGCTGCAGGTGTCTCTGTTGCTGGGTCAGATGTTACTTGTGATTTGAATGTGAATTGGCATTATGCTTATGGTTCTTCCCTTTTTCCTATTTCGGTTTCGGATACTGGGACTGCTTCTGTTCAGGTTAATGGCCTGGAAATGGGGGCGGCGTTGGGCTTGAATGTTACAGAAGGATCTATAAAACTTTCCACCATTGAATGCAATTCTCATATAGATGATATTTCCATAGACCTAGATGGAGGTTCATCTTGGCTCTATCAAGGGATTCTGGATGCTTTCAAAGAAGAAATAGTGTCAACAGTAGAAAAAACAATCACCAAAACACTAAAAACCGAGATTTCAAAGCTTGGATCTATTCTACAAAGTCTTCCGAAACAAATTCCAGTCGATGACGTGGCATCATTAAACGTTACACTTGTTAACAACCCTTTTCTAAGTGACACTTCATTAGGGTTTGAGATAAACGGGTTATTCATAGAAAATAAACCCGGCACACATTCTTACAGAAACAGTTTGCAGCCACCTGTCCATTGTTCAGATCCTTCAAAAATGATTGGAATTGCCCTAGATGAAGCTGTGTTCAAATCTGCATTTTCCTTATATTACAATGCTATGTTTATGCATTGGACTGTGGATAAACTTCCTGAACAATCTCTTTTGAACACAGCAGGGTGGAGATTTATTATTCCTCAACTCTACAAAAAATACCCAAATGATGATATGAGTTTAAATCTCTCTTTATCTGATCCACCAGTTGTGCAGATATCACAGCAGAAAATTGATGCTACTATTTATGCAGATTTTATTATAGATGTTCTTGAAGGGGTTGACACAGTACCTGTTGCTTGTATCTCATTGATCATTTCTAGCTCGGGTTCAGTTCAAATTACCGGAAATAACATTACGGCTCATTTGAAAATGGATGATTTATCCATGTCATTGAAATGGAGCAAGATTGGCACATTGCACATGTTTCTAATTCAGCCGGTGGTGTGGACGATGATTGAAACTGTTTTCGTACCATATGTGAATGCACGAATTGGGCTTGGGTTCCCTTTGCCTCTAATTAACGGGTTTATGCTTCGAAATGCTGAGATAATAACCTCGGATTCGAGAATCACTGTTTGCGGTGATGTTACGTACGAGGAATCATTTGGTGGGACACAAATCTACGATTCGTAG 1467 39.2 MSPVIIYPILILSLLIIPPNPTAADQSSISVLITQTGLDFVKNLLVTKAISKITPTPISGIDKAVEIPLIGKVHIVLSNITIYRFDVGLSQVIPNAAGVSVAGSDVTCDLNVNWHYAYGSSLFPISVSDTGTASVQVNGLEMGAALGLNVTEGSIKLSTIECNSHIDDISIDLDGGSSWLYQGILDAFKEEIVSTVEKTITKTLKTEISKLGSILQSLPKQIPVDDVASLNVTLVNNPFLSDTSLGFEINGLFIENKPGTHSYRNSLQPPVHCSDPSKMIGIALDEAVFKSAFSLYYNAMFMHWTVDKLPEQSLLNTAGWRFIIPQLYKKYPNDDMSLNLSLSDPPVVQISQQKIDATIYADFIIDVLEGVDTVPVACISLIISSSGSVQITGNNITAHLKMDDLSMSLKWSKIGTLHMFLIQPVVWTMIETVFVPYVNARIGLGFPLPLINGFMLRNAEIITSDSRITVCGDVTYEESFGGTQIYDS 488
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi23g00220 488 Gene3D - 30 463 - -
Dapi23g00220 488 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 29 241 IPR017943 GO:0008289(InterPro)
Dapi23g00220 488 SMART bpi2-2 274 472 IPR001124 GO:0008289(InterPro)
Dapi23g00220 488 Pfam LBP - BPI - CETP family, N-terminal domain 37 210 IPR017942 GO:0008289(InterPro)
Dapi23g00220 488 Pfam LBP - BPI - CETP family, C-terminal domain 259 476 IPR001124 GO:0008289(InterPro)
Dapi23g00220 488 PIRSF Lipid-binding-protein 6 481 IPR030675 GO:0005615(InterPro)|GO:0008289(InterPro)
Dapi23g00220 488 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 245 476 IPR017943 GO:0008289(InterPro)
Dapi23g00220 488 Gene3D - 36 216 - -
Dapi23g00220 488 SMART bpi1-3 33 258 IPR017942 GO:0008289(InterPro)
Dapi23g00220 488 PANTHER OS06G0309200 PROTEIN 10 479 IPR045897 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi23g00220 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
251589 Dapi7g00199 Dapi23g00220
386982 Dapi23g00220 Dapi7g00199
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr23:4731818 Dapi24g00932 Dapi-Chr24:19194769 wgd
Dapi Dapi-Chr23:4731818 Dapi7g00199 Dapi-Chr7:4179929 wgd
Dapi Dapi-Chr23:4731818 Dapi8g01105 Dapi-Chr8:23653563 wgd