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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi23g00228 ATGTCGTTGGCCGTTAAACAAGAAAATCAAGACGAAATCAAGAATGGATTTGAAGAAATTGTTGAAGAAAAACAGAGCATGAAGAGAATTGGGAGTGAATCATCGGTTTATGAAACAGAGGATGAAGGTGAAGAAACAGAGGATAATAATAATAATAATAATAATAATAGTAATAATAACAATAAAATCGAATTGGGTCCTCAGTGCACACTCAAATCACAATTAGAGAAAGACAAGGATGATGAAAGCCTTAGAAAGTGGAAAGAACAACTTCTTGGAAATGTTGATATTAATGATGTTGGAGAATCACTCGAACCGGAAGTGAAAATCACGAGCCTTTCGATCTTGTCTCCCGGGAGATCTGACATTGTTCTTGCTATACCCGACGATGGAAAACCGAAAGGTTTATGGTTTACGTTGAAAGAAGGTTGTCGTTACAGTTTGCGGTTCAAGTTTCAAGTCGGACATAATATTGTTTCGGGTTTAAAGTACACCAATAGTGTATGGAGAACTGGTGTAAGAGTGGATAGAGTAAAACAAATGCTTGGAACTTTTAGTCCCCAACAAGAAGCTTACACTTATGATATGCCTGAAGAGACTACACCTTCTGGTTATTTTGCAAGAGGATCTTACTCTGCTAGAACAAAGTTTGTTGATGATGACAACAAATGCTACTTGGAGATCAACTATTCGTTCGATATCCGGAAAGATTGGGCCAGCCATGAATAA 729 37.31 MSLAVKQENQDEIKNGFEEIVEEKQSMKRIGSESSVYETEDEGEETEDNNNNNNNNSNNNNKIELGPQCTLKSQLEKDKDDESLRKWKEQLLGNVDINDVGESLEPEVKITSLSILSPGRSDIVLAIPDDGKPKGLWFTLKEGCRYSLRFKFQVGHNIVSGLKYTNSVWRTGVRVDRVKQMLGTFSPQQEAYTYDMPEETTPSGYFARGSYSARTKFVDDDNKCYLEINYSFDIRKDWASHE 242
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi23g00228 242 MobiDBLite consensus disorder prediction 49 65 - -
Dapi23g00228 242 MobiDBLite consensus disorder prediction 1 65 - -
Dapi23g00228 242 Gene3D Coagulation Factor XIII, subunit A, domain 1 60 240 IPR024792 -
Dapi23g00228 242 MobiDBLite consensus disorder prediction 11 29 - -
Dapi23g00228 242 PRINTS RHO protein GDP dissociation inhibitor signature 191 203 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Dapi23g00228 242 PRINTS RHO protein GDP dissociation inhibitor signature 175 190 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Dapi23g00228 242 PRINTS RHO protein GDP dissociation inhibitor signature 217 234 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Dapi23g00228 242 PRINTS RHO protein GDP dissociation inhibitor signature 158 174 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Dapi23g00228 242 PRINTS RHO protein GDP dissociation inhibitor signature 98 113 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Dapi23g00228 242 PANTHER RHO GDP-DISSOCIATION INHIBITOR 41 238 IPR000406 GO:0005094(InterPro)|GO:0005094(PANTHER)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0007266(InterPro)|GO:0007266(PANTHER)|GO:0016020(PANTHER)
Dapi23g00228 242 FunFam Rho GDP-dissociation inhibitor 1 61 240 - -
Dapi23g00228 242 Pfam RHO protein GDP dissociation inhibitor 50 237 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Dapi23g00228 242 SUPERFAMILY E set domains 45 238 IPR014756 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi23g00228 K12462 Rho GDP-dissociation inhibitor
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Event-related genes

Select Gene_1 Gene_2 Event_name
74024 Dapi12g01283 Dapi23g00228
75974 Dapi17g01161 Dapi23g00228
251593 Dapi7g00209 Dapi23g00228
386986 Dapi23g00228 Dapi7g00209
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr23:4836646 Dapi28g01856 Dapi-Chr28:101033810 dispersed
Dapi Dapi-Chr12:94370204 Dapi23g00228 Dapi-Chr23:4836646 wgd
Dapi Dapi-Chr23:4836646 Dapi24g00928 Dapi-Chr24:19132547 wgd
Dapi Dapi-Chr23:4836646 Dapi28g01206 Dapi-Chr28:88903816 wgd
Dapi Dapi-Chr23:4836646 Dapi7g00209 Dapi-Chr7:4273634 wgd
Dapi Dapi-Chr23:4836646 Dapi8g01100 Dapi-Chr8:23547680 wgd