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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi23g00235 ATGGCTATAACTATAAGCTATACCCTTATTCTAATTTCATTATTTTTTCCATCTCATTTTTATATATCATATGCTCTAAAATGCTCAGATAACAAATTAACATCAATCTACACTTCTTGTAAAGACCTTCCTCATTTATCAGCCCAGATTCATTGGGCCTACAACTCAACCACGGGTGAAGCCAATATTGCGTACCAGGCCCGACAAGGTGCAGGCGGTTGGGTTGCATGGGCCATCAACCCGAACCAAATAGGTATGGTTGGGTCACAAGCATTGGTGGCTTTTGTCAACAATAATGGAAGTGTGACGGTATATCCGACAATGATAACTAGTTACAGCCCGTCAATGCAGCCCACGGATCTTACCTTTCAGGTTTCGGACCTGTCGGCTGAGTTTTTAAACAACGAGATCACTATTTATGCGACTGTAGGCCCGTTTGCAGGCGGGTCTGTTGTTAATCAAGTATGGCAAGCCGGGAATTTGGTTTTAGATGGTGTTCCTCAAATGCACGCGGTTTCTCAACAAAATCTTCAATCGACCGGGGAGCTTGATTTCTTGTCCGATTAA 567 43.03 MAITISYTLILISLFFPSHFYISYALKCSDNKLTSIYTSCKDLPHLSAQIHWAYNSTTGEANIAYQARQGAGGWVAWAINPNQIGMVGSQALVAFVNNNGSVTVYPTMITSYSPSMQPTDLTFQVSDLSAEFLNNEITIYATVGPFAGGSVVNQVWQAGNLVLDGVPQMHAVSQQNLQSTGELDFLSD 188
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi23g00235 188 ProSiteProfiles DOMON domain profile. 46 159 IPR005018 -
Dapi23g00235 188 Pfam Protein of unknown function (DUF568) 86 185 IPR045265 -
Dapi23g00235 188 CDD DOMON-CIL1-like 37 187 IPR045265 -
Dapi23g00235 188 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 5 187 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi23g00235 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
251597 Dapi7g00215 Dapi23g00235
386990 Dapi23g00235 Dapi7g00215
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr23:4955378 Dapi7g00215 Dapi-Chr7:4404060 dispersed
Dapi Dapi-Chr23:4951934 Dapi23g00235 Dapi-Chr23:4955378 tandem