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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi23g00280 ATGGCCAAGCAAAAGATTGTTGTGAAGATTGGCGTCAACAACGACAAGAAAAGCCGTAAGGCTCTGAAGATCGATGTTAGTGTCAGTGGTGTGGAATCGGTGTCTTTTGTTGGTGCAAATAAAGATCAGTTAACACTGACCGGTGAAGGAATCGACTCAGTTGAATTGGCAAAGTTGCTAAGGAAAGGTGTAGGTTACATGGAGCTCGTGAGTGTTGGTTCCGTGGATCCTGCTCCTACCGCCAGTGCTCCCACTAGTGCTGCAGCGGGGCAAACACCTATGGTGCCACCGGTTTATACTCACCATTATAATTACCCTGTGCCGTATCATGTATACGAAGGCCGCTATAACAACGATCCCTCTTGCACTATCATGTGA 378 47.35 MAKQKIVVKIGVNNDKKSRKALKIDVSVSGVESVSFVGANKDQLTLTGEGIDSVELAKLLRKGVGYMELVSVGSVDPAPTASAPTSAAAGQTPMVPPVYTHHYNYPVPYHVYEGRYNNDPSCTIM 125
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi23g00280 125 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 47 4 123 IPR042885 -
Dapi23g00280 125 Gene3D - 1 77 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi23g00280 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
251621 Dapi7g00256 Dapi23g00280
256720 Dapi23g00280 Dapi16g01890
381649 Dapi16g01889 Dapi23g00280
381650 Dapi16g01890 Dapi23g00280
387014 Dapi23g00280 Dapi7g00256
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr23:5726605 Dapi7g00256 Dapi-Chr7:5128173 dispersed
Dapi Dapi-Chr23:5726605 Dapi23g00281 Dapi-Chr23:5749430 tandem
Dapi Dapi-Chr16:70908122 Dapi23g00280 Dapi-Chr23:5726605 wgd
Dapi Dapi-Chr23:5726605 Dapi32g02130 Dapi-Chr32:80905963 wgd
Dapi Dapi-Chr23:5726605 Dapi7g00255 Dapi-Chr7:5115430 wgd