AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi23g00321 ATGTCTTATTCACTACTTATCTCCACCTTCACTGCCTTTCCTAAAACAAACACCCAATCCATCTCCCAACGACCCATCAACACTCGAACCAACCAAACCCAAGGGTTCAGGGTCTCATGCAACGGCGCACCAGATAATATTAATCACCATGACAACCAACTCATACTCCCCCAACCCCAAAAGCTTATACTACCCAACGTAGACCGGAGGAACCTCCTCGTGGGGCTCGGCGGCCTCTACACGACCGCGAACCTCGCTTCCTTACCCGCAGCATTAGCTGCTCCCATAACCACTCCTGATATCACAACCATATGCCAGGAAGCAGATTCCGGGAACATTGAAGACGCGGTTAGGACACAAAATTGTTGTCCGCCTAACCTCGGAAAGACGATTAAAGATTTCAAGTTTCCAACCGAAAAAACGGTGAGGATGAGATGGCCGGCACATAATGGGACCAAAGAGCAGGTGGATAAATATAGAAGAGCCATCCAAGCCATGAGAGCTCTCCAGGACGATCAACCGCACAGCTTCAACAACCAAGCTAAAATCCATTGTGCATACTGCAACGGAGGATACACTCAATTCGATAACGGTTTCCCCAATATCGATATTCAGATCCACAACTCATGGCTCTTCTTTCCTTTCCATCGCTGGTACCTTTACTTCTACGAGAGAATACTCGGAAAGTTGATTAACGATCCCACTTTCGCCTTACCTTTCTGGAAATGGGACGAACCAGCCGGAATGGCCATTCCAGAAATCTTTGCACCGAAAGATATTAATGGAAAACCAAACTCCCTGTATGATGTTTACCGGCAAGCCCGTCATCTCCCGCCAACATTAATCGATCTGGACTTCGATGGCAATGAAAACGGGGTTCCGGATCAGACACAGATAGCTTGCAATCTTCGTACAGTGTACCGAGATTTGGTTAGAAACGGAGTGGATACACTAAGCTTCTTTGGGGGCGAATACGTAGCTGGCACCAATGGTGCGAAGTCAGTCGGATCGGTTGAAGCGGGAAGTCATACGGCCGTGCACAGATGGGTAGGCGACTCAAACCAACCTAATAATGAGGACATGGGTAACTTCTACTCCACTGGGTATGACCCTGTGTTCTACATCCATCATTCAAATATAGACCGTATGTGGAAGCTATGGAAGGAGTTGGGCCTTCCGGGACACGTAGAACCGACGGGTCCAGACTGGTTAAACGCGTCATATGTGTTCTATGACGAGAATCAGGACCTTGTACGTGTTTATAATAAAGACTCCGTCAATATAGACAAGTTCAAGTACAATTACATTGAAAACTCCAAGGAAGTGTTCCCATGGCGCAGGAGTCGGCCCGCCAAACGTGACGCAAGCTAG 1371 47.92 MSYSLLISTFTAFPKTNTQSISQRPINTRTNQTQGFRVSCNGAPDNINHHDNQLILPQPQKLILPNVDRRNLLVGLGGLYTTANLASLPAALAAPITTPDITTICQEADSGNIEDAVRTQNCCPPNLGKTIKDFKFPTEKTVRMRWPAHNGTKEQVDKYRRAIQAMRALQDDQPHSFNNQAKIHCAYCNGGYTQFDNGFPNIDIQIHNSWLFFPFHRWYLYFYERILGKLINDPTFALPFWKWDEPAGMAIPEIFAPKDINGKPNSLYDVYRQARHLPPTLIDLDFDGNENGVPDQTQIACNLRTVYRDLVRNGVDTLSFFGGEYVAGTNGAKSVGSVEAGSHTAVHRWVGDSNQPNNEDMGNFYSTGYDPVFYIHHSNIDRMWKLWKELGLPGHVEPTGPDWLNASYVFYDENQDLVRVYNKDSVNIDKFKYNYIENSKEVFPWRRSRPAKRDAS 456
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi23g00321 456 Pfam Common central domain of tyrosinase 175 389 IPR002227 GO:0016491(InterPro)
Dapi23g00321 456 ProSitePatterns Tyrosinase CuA-binding region signature. 207 224 IPR002227 GO:0016491(InterPro)
Dapi23g00321 456 PANTHER TYROSINASE FAMILY MEMBER 67 438 IPR050316 -
Dapi23g00321 456 Gene3D - 94 441 IPR008922 -
Dapi23g00321 456 SUPERFAMILY Di-copper centre-containing domain 115 435 IPR008922 -
Dapi23g00321 456 PRINTS Tyrosinase copper-binding domain signature 207 224 IPR002227 GO:0016491(InterPro)
Dapi23g00321 456 PRINTS Tyrosinase copper-binding domain signature 238 243 IPR002227 GO:0016491(InterPro)
Dapi23g00321 456 PRINTS Tyrosinase copper-binding domain signature 369 387 IPR002227 GO:0016491(InterPro)
Dapi23g00321 456 PRINTS Tyrosinase copper-binding domain signature 342 353 IPR002227 GO:0016491(InterPro)
Dapi23g00321 456 Pfam Polyphenol oxidase middle domain 399 450 IPR022739 GO:0004097(InterPro)
Dapi23g00321 456 ProSitePatterns Tyrosinase and hemocyanins CuB-binding region signature. 370 381 IPR002227 GO:0016491(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi23g00321 K00422 polyphenol oxidase [EC:1.10.3.1]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr23:6730337 Dapi7g00294 Dapi-Chr7:6023311 dispersed
Dapi Dapi-Chr23:6724324 Dapi23g00321 Dapi-Chr23:6730337 tandem
Dapi Dapi-Chr23:6730337 Dapi23g00322 Dapi-Chr23:6745035 tandem