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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi23g00362 ATGGGTTGCGTTGGATCATCACTCAATAAGCAAGACCGAACTGTGAAAAAGTTAAGGAAGCCGAAGCCATGGGAGTTCCCACGGCCCGTTACGTGGAGTCAGTTGGCGCAAATGCGCGATGAGTTTTGGGATTCGGCTCCTCACCATGGTGGCAAGAAAGAAATCTGGGACGCGATACATGCAGCGGCTGAAGCCGACATAGAACTCGCTCAAGCAATATTGGACAGTGCAGGGGTCATTGTTCATAAACCTGATATGACAGTATGTTACGATGAAACAGGTACCAAATATAAAATACCAAGATATGTGTTGAGTGAGCCAACAAACTTGATACAACTAAGTTGA 345 46.09 MGCVGSSLNKQDRTVKKLRKPKPWEFPRPVTWSQLAQMRDEFWDSAPHHGGKKEIWDAIHAAAEADIELAQAILDSAGVIVHKPDMTVCYDETGTKYKIPRYVLSEPTNLIQLS 114
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi23g00362 114 MobiDBLite consensus disorder prediction 1 21 - -
Dapi23g00362 114 Gene3D - 31 104 IPR038169 -
Dapi23g00362 114 Pfam Ubiquitin-binding domain 16 112 IPR032752 -
Dapi23g00362 114 PANTHER UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATED 1 111 IPR039869 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi23g00362 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
251663 Dapi7g00339 Dapi23g00362
256705 Dapi23g00362 Dapi16g01831
381618 Dapi16g01831 Dapi23g00362
387056 Dapi23g00362 Dapi7g00339
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr15:95456359 Dapi23g00362 Dapi-Chr23:7852742 dispersed
Dapi Dapi-Chr21:116946418 Dapi23g00362 Dapi-Chr23:7852742 dispersed
Dapi Dapi-Chr23:7852742 Dapi32g02072 Dapi-Chr32:76944177 dispersed
Dapi Dapi-Chr16:67125310 Dapi23g00362 Dapi-Chr23:7852742 wgd
Dapi Dapi-Chr23:7852742 Dapi7g00339 Dapi-Chr7:7169464 wgd