AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi23g00372 ATGGCTGCTTATTCTTGTTCCCTTTCCTTTATCTTCTTCTGTTTGATCTTCCAATCATTCTCCGTCTCCAACGCCATTGTTCCCCCCAACGAGACTTTCCATTATGTCAACCAAGGCGATTTAAGCTTCGAAACTGAACACTTACTCTTTGATGCCGAATACGCACCAACTTACCGTGTACTTGAGCCATTTACCAACCCGTTCCGCCTCTGTTTCTACAACACCACCCCAAACGCATATACCCTCGCTCTCCGCATGGGCGTTGTACGTGACCGAAGCGTCAGGCGATGGGTCTGGGACGCCAATAGAGGCAAACCAGTCCGCGAAAACGCCACATTCTCGTTAGGCTCTGACGGAAACCTCGTACTCGCGGAGGCCAACGGGCAGATTGTATGGCAAACCAACACCGCCAATAAGGGGGTCGTCGGTTTTGCCATATTATCCGACGGTAACGTCGTGCTTCGTGACTCAAAGGGTAACTTTGTCTGGCAAAGCTTCGATTCCCCGACCGACACTCTCTTGGTCGGACAGAGTCTCCGGGTGAAAGGAGGTCCGTACAAGCTCGTGAGCCGCGAGTCGGTTACTAACAACGTTGACGGGGCTTATAGCTTTGTAATTGAGCCTAAAAGACTGGCTTTGTACTACAAGAACACCATGCGTTACTGGTCATCTACTTTCCCTGAATTAAACCGAAGAAATGTGATTTTGGAAAATGCGACGTTGATAATTCAAGAAACTGAGTACAAAGAGAACAACTATCACTCATTTAGGTGTACTCTCAAAAATGCTCGGCGGTTTTTCGAAAATCCTGATTTACGTTTGGGCATAGTTCGGTACAACAGCTCCTTATCGTATTTCCGATTGGGCATTGACGGGAACCTAAGACTCTACACTTACCGTGAAAATGTCCGTTACAACGCGTGGAGCTTGTTATACACTTTGTTTGATAGGTTTGCGATCGAGAACGGGATGATTATTGAAGACGAGTGTCAGTTACCAAATCGGTGCGGGAAGTTTGGGCTTTGTAAGAACAACCAATGTGTCGGATGCCCCACCCCAAACGGGGTGTCTGAGTGGAGCGAAGAATGTGACACGAAGCCACCGGGGTGTAACGCAAGTGGTTTTACGTATTATCAGCTCAAAGGGGTAGACCATTTCACGGTTAAGTATACGGCCGGGAATGGGCCCGTGAAACGGAGCGATTGCGAGAGCAAATGCACGAAGGATTGCAAGTGTTTGGGTTACTTTTATCATACAGATAAGTCGAGATGTTGGATCGCTTACGAGTTGAAGACGTTGACGAGGGTCGGGAATTCGACTAGTTTGGCGTACATCAAAACACCCGTTCGCTAG 1353 48.12 MAAYSCSLSFIFFCLIFQSFSVSNAIVPPNETFHYVNQGDLSFETEHLLFDAEYAPTYRVLEPFTNPFRLCFYNTTPNAYTLALRMGVVRDRSVRRWVWDANRGKPVRENATFSLGSDGNLVLAEANGQIVWQTNTANKGVVGFAILSDGNVVLRDSKGNFVWQSFDSPTDTLLVGQSLRVKGGPYKLVSRESVTNNVDGAYSFVIEPKRLALYYKNTMRYWSSTFPELNRRNVILENATLIIQETEYKENNYHSFRCTLKNARRFFENPDLRLGIVRYNSSLSYFRLGIDGNLRLYTYRENVRYNAWSLLYTLFDRFAIENGMIIEDECQLPNRCGKFGLCKNNQCVGCPTPNGVSEWSEECDTKPPGCNASGFTYYQLKGVDHFTVKYTAGNGPVKRSDCESKCTKDCKCLGYFYHTDKSRCWIAYELKTLTRVGNSTSLAYIKTPVR 450
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi23g00372 450 Pfam D-mannose binding lectin 98 182 IPR001480 -
Dapi23g00372 450 PIRSF SLG 1 450 IPR035446 -
Dapi23g00372 450 Gene3D - 64 167 IPR036426 -
Dapi23g00372 450 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 67 447 IPR051343 -
Dapi23g00372 450 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 223 IPR036426 -
Dapi23g00372 450 ProSiteProfiles Bulb-type lectin domain profile. 46 167 IPR001480 -
Dapi23g00372 450 CDD B-lectin 57 169 IPR001480 -
Dapi23g00372 450 SMART blect-4 52 169 IPR001480 -
Dapi23g00372 450 ProSiteProfiles PAN-Apple domain profile. 370 449 IPR003609 -
Dapi23g00372 450 CDD PAN-AP-plant 400 448 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi23g00372 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
251670 Dapi7g00352 Dapi23g00372
387063 Dapi23g00372 Dapi7g00352
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr23:8166169 Dapi7g00352 Dapi-Chr7:7509622 dispersed
Dapi Dapi-Chr23:8091566 Dapi23g00372 Dapi-Chr23:8166169 tandem