AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi23g00423 ATGAGAGGAATAATTGGGAAATACCCATCAAGTGATGGAAATGGTGAAGTGGGTGGTGCAAATGGGATCATAAAAGGCAACAGAAAATGCAGAGATATTGTGTTTCTTGTTTTTTTCATAGCTTTCTGGATCGCCATGATTGTTAACTCCAGCTTCGGCTTCAACCAAGGAAACCCATTGAGGCTAAACTTTGGGTTGGATTATAAAGGAAATGTATGTGGTGGCAAACACAAAGATTTTAACCTCCATGAATTGGAACTCAAATATTATGTTAATCCTAATGAAGTTTACCATAGTGGATTAAAAAACAGTGGAGTAAAACTGTCTAACGCGCGCACAATATGTTTATTGGATTGCCCGATTCCATCTGAAGATTCATTGAATTGGGTTTGTGATTATCCAGAAGGAGATATCCGTATTTCATTAGACGATTGGATCGACATGAATTATGATTATTTTGCTGATCTTACTCAAGAACTAAGAAACACTTCTCTTCAGCTTCAAGGTCCTTGTTACCCTGTTATTTTTCCAAGCGTAAACGTTTATTGGACTTGCCAATTTATTGATCGACCATCAAACGTGTCGTTAACACATTGGAAACAAATGAATGGGGTTACTATTGAAGATAATATGGTCATAGATAAAGCTATTCATAACTCCATTAATGCACGGTCTTCAGTATTGAAGAGATATGTAGCTGATGTTGGAAAATCATGGCCAGTTTTGATTGTGTGTGGTGGACTCTTGCCTCTACTCTTATCATTGCTATGGCTTTTAATGATTCGGCATTTTGTAACCACGATGCCGTGGGTTACCGTGTTCTTCTTTAATGGCCTTATAATATCAGTCACAATGTTCTACTACTTGAAAGCCGGATGGATTGGAAATGATGCTATCTCACCCATCATTGGTGAACATGATCCATACTATCATGTTTCTGCAAGGGAGCAACATCATATACGTGCAGCTGCGTTTCTCATGACTTGTGTTATGATTGTTGCTGTTTTATCATCTATAGCTATAGTGAGACGAATTCTTATGGCAACATCTGTTCTCAAGGTTGCCGCAAAGGTTATTGGAGAAGTTCATGCTCTAATAGTATTCCCAGTTGTACCGTATTTAATCCTTGCGGTCTTTTACATGTTTTGGTTATCGGCTGCTCTTAATCTTTTCAGTTCGGGTCAAGTAGCCCGAAATGATTGCAACACAACTTGTTGTGCTTATGATCTCCAAACCAAACGAGTCACTTGTGATGATTGTTGTGGTTACAGTATCCATTACACCCCTCATATAGCAGCTTCCATTCTATTCCACTTGTTTGGATGTTATTGGGCCACTCAGTTTATCATAGCATGTTCTTCAACCGTGATTGCGGGTTCTGTAGCTTCATACTATTGGGCTCGTGGGGAATCTTCGACAACGATTCCGTTTCTTCCGGTTTTTCCGTCAATGAAGCTACTCATACGTTATAGCCTTGGCTCGGTGGCAATCGGTTCCTTGATTGTATCTTTTGTTGAGTCGACTCGGTTTATACTCGAGGCCATTCGTCGGAGACTTAAAGTTGCTGACATCATGCCCGAAAGCTGGATTAAAAGAATGATGTTTTATACTTCTCGTGTTTGCTTGAAATCTATTGAGTTGACCTTGAAATCTGTTAACCGCAATGCATACATTATGATTGCTATAACAGGAAAAGGGTTCTTCAAAGCTTCTGAAATGGCAACAGATTTGATAATTAGTAACATTCTCCGTATAGGCCGAGTGAACGTAATCGGTGACGTTATATTGTTTCTAGGAAAGCTATGTGTTAGTCTTGCAAGTGCACTTTTTGCATTTCTCATGTTGGATACTCATAAATACAAATCATCTCACAACAAGATCACATCCCCGTTATTTCCGGTGCTGGTGTGTTGGGGTTTAGGATATGTGGTAGCAACCCTTTTCTTTGCGGTGGTGGAAATGTCAATCGATACTATTATACTTTCATATTGCCAAGATGCAGATGAACATCAAGGGACGGCACATTACGCTCCTCCGCTTTTGATTGAAACATTTGATGAACAAAATGAGGTGCAAAGAATTGCACAATAA 2091 39.31 MRGIIGKYPSSDGNGEVGGANGIIKGNRKCRDIVFLVFFIAFWIAMIVNSSFGFNQGNPLRLNFGLDYKGNVCGGKHKDFNLHELELKYYVNPNEVYHSGLKNSGVKLSNARTICLLDCPIPSEDSLNWVCDYPEGDIRISLDDWIDMNYDYFADLTQELRNTSLQLQGPCYPVIFPSVNVYWTCQFIDRPSNVSLTHWKQMNGVTIEDNMVIDKAIHNSINARSSVLKRYVADVGKSWPVLIVCGGLLPLLLSLLWLLMIRHFVTTMPWVTVFFFNGLIISVTMFYYLKAGWIGNDAISPIIGEHDPYYHVSAREQHHIRAAAFLMTCVMIVAVLSSIAIVRRILMATSVLKVAAKVIGEVHALIVFPVVPYLILAVFYMFWLSAALNLFSSGQVARNDCNTTCCAYDLQTKRVTCDDCCGYSIHYTPHIAASILFHLFGCYWATQFIIACSSTVIAGSVASYYWARGESSTTIPFLPVFPSMKLLIRYSLGSVAIGSLIVSFVESTRFILEAIRRRLKVADIMPESWIKRMMFYTSRVCLKSIELTLKSVNRNAYIMIAITGKGFFKASEMATDLIISNILRIGRVNVIGDVILFLGKLCVSLASALFAFLMLDTHKYKSSHNKITSPLFPVLVCWGLGYVVATLFFAVVEMSIDTIILSYCQDADEHQGTAHYAPPLLIETFDEQNEVQRIAQ 696
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi23g00423 696 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 22 689 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
Dapi23g00423 696 Pfam Plasma-membrane choline transporter 326 667 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi23g00423 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
251696 Dapi7g00395 Dapi23g00423
256697 Dapi23g00423 Dapi16g01787
381602 Dapi16g01787 Dapi23g00423
387089 Dapi23g00423 Dapi7g00395
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr14:1741920 Dapi23g00423 Dapi-Chr23:9411895 wgd
Dapi Dapi-Chr16:63550784 Dapi23g00423 Dapi-Chr23:9411895 wgd
Dapi Dapi-Chr23:9411895 Dapi30g00102 Dapi-Chr30:1749069 wgd
Dapi Dapi-Chr23:9411895 Dapi32g02021 Dapi-Chr32:71157292 wgd
Dapi Dapi-Chr23:9411895 Dapi7g00395 Dapi-Chr7:8620124 wgd