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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi23g00439 ATGGGCCGAGTAGGAAGAGATTGGACTCAGATCTACGCAATATACGGAATGGACGATTGGCACACTCCAATATTTCTGTTAATCCACGCGCTTGTATTTTCCGCTTCGTCGATATTATTTCTGTTATACTTCAACTGTATCTGTTACTCATTCGAGTCAGTTTTTCCTTCCGTATTTTCCGGAAGCGTCGCCAGATTCGCCGCCGGCTTCACCGGCTCCGTCATGGCTCTGTCAGCCGTCTGCTTATTCTACGCCGCCGGCAACATGTTTTACTCCTCCGTCGCGCTTCGTTGGGACATAGCTCAACGCATGGTCAACGCGGTCAAAGACTGGTCAACGGTCAAGACCGTGCTCGACGTCGGCTGCAGCCGCGGCATCCTGCTTAACGCCGTTGCAATGGAGCTGAAAAAAGAAGGCAGCTCGGGTCGGGTCGTAGGGTTAGATAAGAAGAACACGACGTTATCGACGTTACGGACGGCGGCTATTGAAGGCGTGCAGGAGTACGTCACGTGCCGTGAAGGCGACGCGCGGCGGCTTCCGTTTCCTGATAACTACTTCGACGTGGTGGTGTCGGCTGGGTTTGTGCATAAGGTTGGGAAGGAGTTTGGCGCGAAGACGGCGTTGGCGTCGGCTGAGAGGATGAGAGTTGTTGGGGAGGTTGTTAGGGTTTTGAAAGAAGGTGGGGTAGGGGTTGTGTGGGACATGGTTTATGTACCGGAGTATGTTCTCCGTTTGCAGGAATTACAGATGGAGGATATTAGAGTGTCGGAGAGAGTAACGGCGTTTATGGTTAACAGCCATATCGTGTCCTTCCGGAAACCCAGCCACCACGTGATAGGGCCCACTGAAGTGAGATTGGATTGGAGATTCAATAATATCTTTTAA 885 51.86 MGRVGRDWTQIYAIYGMDDWHTPIFLLIHALVFSASSILFLLYFNCICYSFESVFPSVFSGSVARFAAGFTGSVMALSAVCLFYAAGNMFYSSVALRWDIAQRMVNAVKDWSTVKTVLDVGCSRGILLNAVAMELKKEGSSGRVVGLDKKNTTLSTLRTAAIEGVQEYVTCREGDARRLPFPDNYFDVVVSAGFVHKVGKEFGAKTALASAERMRVVGEVVRVLKEGGVGVVWDMVYVPEYVLRLQELQMEDIRVSERVTAFMVNSHIVSFRKPSHHVIGPTEVRLDWRFNNIF 294
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi23g00439 294 PANTHER EXPRESSED PROTEIN 1 289 - -
Dapi23g00439 294 Pfam Methyltransferase domain 118 230 IPR013216 GO:0008757(InterPro)
Dapi23g00439 294 CDD AdoMet-MTases 116 237 - -
Dapi23g00439 294 Gene3D Vaccinia Virus protein VP39 85 273 IPR029063 -
Dapi23g00439 294 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 91 244 IPR029063 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi23g00439 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
79364 Dapi23g00439 Dapi24g00992
79365 Dapi23g00439 Dapi25g00332
79366 Dapi23g00439 Dapi9g00320
251706 Dapi7g00412 Dapi23g00439
387099 Dapi23g00439 Dapi7g00412
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr23:9681602 Dapi8g01173 Dapi-Chr8:25405068 dispersed
Dapi Dapi-Chr23:9681602 Dapi25g00332 Dapi-Chr25:6680930 wgd
Dapi Dapi-Chr23:9681602 Dapi7g00412 Dapi-Chr7:9005501 wgd
Dapi Dapi-Chr23:9681602 Dapi9g00320 Dapi-Chr9:5792416 wgd