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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi23g00533 ATGCATGATTTTTGCTTTACGATCCCTTACGGGATGATAGTGTTCTGCGGTGGGATTATTGGATTTGCAAGAAAAGGGAGCACCACATCGTTGGCTGGGGGTGTGGGCACTGGATTACTGCTTTTCCTTGCTTCCTATCTCACTCTCAATGCCTTCCACAAGCGAAAGAACTCATGGTTTGGGTTGGTTCTTGAAACTGTTTGTGCTGCTGCACTTACATGGGTTATGGGACAGCGATACACAGAAACTGCTAAAATCATGCCTGCTGGTGTTGTTGCTGTTATCAGTGGATTGATGACAGCATTTTATCTGTACAAGATCGCCACTGGCGGCAACCATTTTCCCGCCAAAACCGAATGA 360 46.39 MHDFCFTIPYGMIVFCGGIIGFARKGSTTSLAGGVGTGLLLFLASYLTLNAFHKRKNSWFGLVLETVCAAALTWVMGQRYTETAKIMPAGVVAVISGLMTAFYLYKIATGGNHFPAKTE 119
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi23g00533 119 Gene3D - 1 111 IPR044890 -
Dapi23g00533 119 PANTHER TRANSMEMBRANE PROTEIN 14, 15 1 108 IPR005349 GO:0009706(PANTHER)|GO:0015245(PANTHER)|GO:0015908(PANTHER)|GO:0016020(InterPro)
Dapi23g00533 119 Pfam Transmembrane proteins 14C 6 103 IPR005349 GO:0016020(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi23g00533 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
251766 Dapi7g00519 Dapi23g00533
387159 Dapi23g00533 Dapi7g00519
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1913106 Dapi Dapi20g02382 Dapi-Chr20:124770816 Dapi23g00533 Dapi-Chr23:12001355
1917852 Dapi Dapi23g00533 Dapi-Chr23:12001355 Dapi4g02479 Dapi-Chr4:133119333
2035334 Dapi Dapi23g00533 Dapi-Chr23:12001355 Dapi7g00519 Dapi-Chr7:11272403