AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi23g00547 ATGAGGTTTCAAATCACTCGTAATTTAACCCTAGCCTTCGATTACCGCAGAGCCGTCGTTTCTTCTTCCGCATCACTTTTACCTCTCCCTTCCGATTATTATTCCAACAATTATCGCCTACGCCGTCTTAATCAATCGACCGTTGCTTATTCAGTGCGAGATTCCTTGACCATGGGTTCGCTGGCGGCGGAGGAGGTTGAGTGGCCTGCTAACAAAGTTAGGGATTCGTTTATTAAGTTTTTTGAAGAACGGAATCATGTTTATTGGAAATCAAGCCCGGTCGTTCCGGTCAACGATCCTACACTTCTGTTTGCTAATGCTGGAATGAATCAGTTCAAGCCAATTTTCTTGGGTACCGCTGACCCTAACACTTCTTTAAGCAAGCTGACTCGTGCCTGCAACACGCAGAAATGCATTCGAGCGGGTGGGAAGCATAATGATCTTGATGATGTTGGAAAAGATACTTATCACCACACATTCTTTGAGATGCTTGGCAATTGGTCATTTGGTGATTATTTTAAAGTGGAAGCTATTGGTTGGGCTTGGGAACTTCTCACAGTGGTTTATAAGCTTCCTACTGATCGGATATATGCTACCTATTTTGGCGGTGATGAGAAATTGGGACTTCCTGCTGATAATGAAGCTAGAGATATATGGCTCAAATATTTGCCATCTGCAAGAGTCTTGCCGTTTGGATGTAAAGACAATTTCTGGGAGATGGGTGACACTGGACCTTGTGGACCCTGTACTGAAATACACTTTGATAGAATTGGTGGTCGTGATGCTGCTGAGTTGGTTAATAATGATGATCCTACATTGATCGAAATATGGAATAATGTGTTTATTCAGTTTAACAGGGAAGCTGATGGTTCCTTGAAACCTCTACCCGCCAAGCATGTGGATACTGGAATGGGTTTCGAAAGATTGACTTCCATTCTTCAGAACAAAATGAGCAACTATGATACTGATGTTTTTATACCTATTTTTGATGCTATCCAACAGGCAACTGGTGCTAGACCGTATTCAGGCAAAGTGGGCCCCGATGATGTGGATGGAATTGACATGGCATACAGAGTTGTTGCTGACCACATTAGAACTCTTTCATTTGCCATTGCAGATGGTTCTTGTCCAGGAAATGAAGGGCGTGAATATGTTTTGAGGCGCATTCTTCGCCGAGCTGTACGTTATGGAACAGAAGTACTGAAAGCGCAACAGGGATTTTTCAATGGATTGGTAAAAGTTGTGGTGGATATAATGAGCCATGTTTTTCCTGAGCTTAAACAACAAGAGGCACGCATTAGAGAAATTATAGCCGAAGAGGAAGCAAGTTTTGGGAGGACTCTACTTCATGGAATTGAGAAGTTTAAGAAGACTGCTCAAGATGTTCAGGGAAAGATATTTAGTGGACATGATGCATTTGTTTTGTGGGATACTTATGGATTCCCACTGGATCTGACTCAGTTGATGGCAGAAGAAAGAGGGTTGGTGGTTGATGTTGAGGGCTTTAATGTTGCTATGAATGAAGCTAGAGAAAGATCAAGAAATGCCCAGAATAAGCAAGCTGCGGTTACAATTGTCATGGATGCAGATGCCACCTCAGCACTGCATAAGAGAGGGGTGGCTACAACAAATGACAGTTTCAAGTTTACATGGCTAAAGGACCACAAAACTGTGATAAAAGCCATTTACACTGGCTCTGAGTATGTGGACCGTGCTGATGCTGGTGATGATGTTGGCATAATTCTTGAGAGCACAAGTTTTTATGCCGAGCAAGGTGGTCAGATATTTGATACTGGAGTACTTGGAGGCCCATCTGGATCATTTGATGTCTGTAACGTTCAAATTTATGGTGGTTTTGTGCTTCATCTTGGTAAAATTAGTGGGGAGTTGGCCCGATTTCATGTGGGTGATGAAGTAATTTGTAAGGTGAACTATGAAAGGCGTCAACGCATTGCTCCTAATCATACATGTACACACATGTTAAATTTTGCTCTCAGGGAAGTACTTGGGGGTCATATTGACCAGAAAGGATCCATTGTTCTTCCAGAAAAATTAAGGTTTGACTTCTCCCACGGGAAGCCCGTAAAGCCTGATGACCTTCGAAGAATTGAATCAATTGTCAATGAACAAATTAAAGCCGAGCTGGAGGTTTCTGCAAAGGAGGCAAGCCTTGCTGATGCAAAAAGAGTAAACGGTTTGCGGGCTGTTTTTGGTGAAGTTTATCCTGATCCCGTTAGGATTGTTGCTATCGGTCAAAAAGTGGACGATTTATTGGCTGATCCTGAAAATGAAAAATGGTCGTCCATATCTGCAGAACTCTGTGGCGGGACCCATATTTCAAACACACGTGAGGCGAAAGCATTTGCTCTTTTGTCCGAGGAGGGAATTGCTAAGGGGATTAGGAGAGTTACTGCTGTAACAACCGACTATGCTTTTGAAGCTATTGAAAACGCATCTAAGCTTGAGCTGGAAGTTGATCTGGCATCTAAGCTGGAAGGAAGCCTTCTTGAACAGAAAGTAACATCTTTAAATGGTCAAGTGGAGTCTGCCTCGATTCCATCCGCAAAGAAGGCTGATCTTAAGGCAAAAATTTCCATCCTTCAGAGTGAAGTAATAAAGGCAAAAAAGAAGACTGCTGAAGAGAACATACGAAAAGCTGTTGAAGCTGCCACTGAGGCAGCAGAAGTTGCATCTTCTGAGGGGAAAGCCTTCTGCATTTCACATGTTGGTGTAGGGTCAGATACTTCTGCTATTCGTGAAGCGGTTGTCAAAGTCATGGAGCAAAAGGGAATGGCGGTGATGGTTTTTAGCACTGATGAACAATCAAAGAAGGCGTTAGTTTGTGCGGGTGTGCCAGAAAAAAGCAATAAAAGCAACCAGCTGAAGGTTTTAGACTGGCTGAAGGCAGCACTGAAGCCGCTAGAAGGCAAAGGCGGTGGAGGGAAAGGCGGTCTTGCTCAAGGACAGGGACCGGATATCAAACATGTGGACGAGGCAATAGATGTTGCCAAGTCATTCGCTTCTCTCAAACTGGGTTGA 3039 43.44 MRFQITRNLTLAFDYRRAVVSSSASLLPLPSDYYSNNYRLRRLNQSTVAYSVRDSLTMGSLAAEEVEWPANKVRDSFIKFFEERNHVYWKSSPVVPVNDPTLLFANAGMNQFKPIFLGTADPNTSLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKVEAIGWAWELLTVVYKLPTDRIYATYFGGDEKLGLPADNEARDIWLKYLPSARVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGGRDAAELVNNDDPTLIEIWNNVFIQFNREADGSLKPLPAKHVDTGMGFERLTSILQNKMSNYDTDVFIPIFDAIQQATGARPYSGKVGPDDVDGIDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGTEVLKAQQGFFNGLVKVVVDIMSHVFPELKQQEARIREIIAEEEASFGRTLLHGIEKFKKTAQDVQGKIFSGHDAFVLWDTYGFPLDLTQLMAEERGLVVDVEGFNVAMNEARERSRNAQNKQAAVTIVMDADATSALHKRGVATTNDSFKFTWLKDHKTVIKAIYTGSEYVDRADAGDDVGIILESTSFYAEQGGQIFDTGVLGGPSGSFDVCNVQIYGGFVLHLGKISGELARFHVGDEVICKVNYERRQRIAPNHTCTHMLNFALREVLGGHIDQKGSIVLPEKLRFDFSHGKPVKPDDLRRIESIVNEQIKAELEVSAKEASLADAKRVNGLRAVFGEVYPDPVRIVAIGQKVDDLLADPENEKWSSISAELCGGTHISNTREAKAFALLSEEGIAKGIRRVTAVTTDYAFEAIENASKLELEVDLASKLEGSLLEQKVTSLNGQVESASIPSAKKADLKAKISILQSEVIKAKKKTAEENIRKAVEAATEAAEVASSEGKAFCISHVGVGSDTSAIREAVVKVMEQKGMAVMVFSTDEQSKKALVCAGVPEKSNKSNQLKVLDWLKAALKPLEGKGGGGKGGLAQGQGPDIKHVDEAIDVAKSFASLKLG 1012
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi23g00547 1012 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 68 817 IPR018165 GO:0003676(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Dapi23g00547 1012 FunFam Alanine--tRNA ligase, cytoplasmic 67 317 - -
Dapi23g00547 1012 SUPERFAMILY Class II aaRS and biotin synthetases 69 320 IPR045864 -
Dapi23g00547 1012 Hamap Alanine--tRNA ligase [alaS]. 68 1011 IPR023033 GO:0004813(InterPro)
Dapi23g00547 1012 CDD AlaRS-core 70 316 - -
Dapi23g00547 1012 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 321 521 IPR018162 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006419(InterPro)
Dapi23g00547 1012 SMART tRNA-SAD-4 745 804 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Dapi23g00547 1012 SUPERFAMILY Translation proteins 574 643 IPR009000 -
Dapi23g00547 1012 FunFam Alanine--tRNA ligase, cytoplasmic 644 819 - -
Dapi23g00547 1012 PRINTS Alanyl-tRNA synthetase signature 146 157 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Dapi23g00547 1012 PRINTS Alanyl-tRNA synthetase signature 274 285 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Dapi23g00547 1012 PRINTS Alanyl-tRNA synthetase signature 358 374 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Dapi23g00547 1012 PRINTS Alanyl-tRNA synthetase signature 382 395 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Dapi23g00547 1012 PRINTS Alanyl-tRNA synthetase signature 301 314 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Dapi23g00547 1012 Gene3D - 644 820 - -
Dapi23g00547 1012 Pfam DHHA1 domain 860 1006 IPR003156 GO:0003676(InterPro)
Dapi23g00547 1012 Gene3D - 899 1007 - -
Dapi23g00547 1012 FunFam Alanine--tRNA ligase 542 642 - -
Dapi23g00547 1012 Pfam tRNA synthetases class II (A) 72 646 IPR018164 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Dapi23g00547 1012 Gene3D - 537 643 - -
Dapi23g00547 1012 Coils Coil 857 877 - -
Dapi23g00547 1012 Coils Coil 499 519 - -
Dapi23g00547 1012 SUPERFAMILY ThrRS-AlaRS common domain 643 816 IPR018163 GO:0000166(InterPro)
Dapi23g00547 1012 PANTHER ALANYL-TRNA SYNTHETASE 64 1008 IPR050058 GO:0002161(PANTHER)|GO:0004813(PANTHER)|GO:0005739(PANTHER)|GO:0006419(PANTHER)|GO:0009507(PANTHER)
Dapi23g00547 1012 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 745 803 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Dapi23g00547 1012 NCBIfam alanine--tRNA ligase 72 990 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Dapi23g00547 1012 Gene3D Bira Bifunctional Protein; Domain 2 69 317 IPR045864 -
Dapi23g00547 1012 FunFam Alanine--tRNA ligase 899 1007 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi23g00547 K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
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Event-related genes

Select Gene_1 Gene_2 Event_name
251774 Dapi7g00530 Dapi23g00547
387167 Dapi23g00547 Dapi7g00530
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1917865 Dapi Dapi23g00547 Dapi-Chr23:12251444 Dapi5g00996 Dapi-Chr5:55018822
1964725 Dapi Dapi24g00104 Dapi-Chr24:1440077 Dapi23g00547 Dapi-Chr23:12251444
2035342 Dapi Dapi23g00547 Dapi-Chr23:12251444 Dapi7g00530 Dapi-Chr7:11439814