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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi23g00555 ATGGCTAGAAGCTCATTCAAACTGGAACATCCTCTCGAGAGGCGTCAAGCCGAGGCTGCTCGTATCAGGGAGAAGTATCCTGATAGAATTCCAGTTATTGTGGAGAAGGCTGAAAGAACCGACATACCTGATATCGACAAGAAGAAATATTTGGTACCTGCTGATCTGACTGTTGGACAGTTTGTTTATGTGGTGAGGAAGAGGATTAAACTGAGTGCTGAAAAAGCCATTTTTATCTTTGTGAAGAACATTCTGCCACCTACTGCTGTCATGATGTCTGCTATCTATGAGGAAAACAAAGACGAGGATGGTTTCCTGTACATGACTTACAGTGGGGAGAACACGTTTGGAGCATGTTGA 360 43.61 MARSSFKLEHPLERRQAEAARIREKYPDRIPVIVEKAERTDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAVMMSAIYEENKDEDGFLYMTYSGENTFGAC 119
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi23g00555 119 FunFam Autophagy-related protein 1 117 - -
Dapi23g00555 119 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A-1B LIGHT CHAIN 3-RELATED 4 117 IPR004241 GO:0006995(PANTHER)
Dapi23g00555 119 Gene3D - 1 118 - -
Dapi23g00555 119 SUPERFAMILY Ubiquitin-like 4 117 IPR029071 -
Dapi23g00555 119 CDD Ubl-ATG8 12 114 - -
Dapi23g00555 119 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi23g00555 K08341 GABA(A) receptor-associated protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
79386 Dapi23g00555 Dapi24g00947
79387 Dapi23g00555 Dapi25g00287
79388 Dapi23g00555 Dapi8g01123
79389 Dapi23g00555 Dapi9g00270
251780 Dapi7g00537 Dapi23g00555
387173 Dapi23g00555 Dapi7g00537
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1917870 Dapi Dapi23g00555 Dapi-Chr23:12329332 Dapi24g00947 Dapi-Chr24:19454916
2035349 Dapi Dapi23g00555 Dapi-Chr23:12329332 Dapi7g00537 Dapi-Chr7:11503879