AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi23g00565 ATGAATATTGAAATCCACGGGAGACATGCGCTTCTCTTCGACGACGATGCCTCCGCAGCCTTCGTAAACTCCGATGACGCACTTGTTGAATGGAATTCTCTGTTAATCGACCGTTACGACGTCCGGCATCTCCTTTCTAGCCCTCCGCCTTCCCGGAGGCGGCGCAATCCACAAACATCGCACTCATCTTCCGCCGACGCGGACATCGATTACGAACGGTACCTGGATCTCCCCTCACCGTCAGAGGAAGAAGAAGAAGATGCAAAACCAGAACCCATAGGTGGATTTAATGCTGTTGCTTTTTCTTATGGAAATGATGAGGATTCTAATGATCACAAGACTGCCGAGACTGACCCAGAAGTCCCTAAATTTCATCCCCCCTTCCCTGTACCTGACAGCCTTGTTCAAAACTTGCCTCCGACAGAGAAAGTACATCAGATTATTGCGAGGACTGCTCTTTATGTTAGTAAAAATGGAGGTCAATCAGAGATTATTTTGAGGGTGAAGCAAGGAGACAACCCGACCTTTGGGTTCTTAATGCCAGATCATCACCTACATTCATACTTCAGATTTCTGGTTGACAACCAGGATCTCTTACATTCGAAAGACAATGGGCAGCTTGAAAACGAGGAGAAAATATCACATACCGGAGCATTGTCTTTACTTGGTTCTGTATATGGCACTGGTGAGGATGATGATGGTGAAACAGAGCATTTATCATCATCATCATCTAAAGAATGTGTATCTGGGAACACTGTGAATGTAGATGTCACCGTTTCTCTTGCAGCAGTGAAGCCCATGTTGCCATCTGACAAAGATGAGCCTATTCTGAAAAGGAATTCTTTGTCAAATGCATTGAAAACCGGAAGAACTAGTAGTATTAAAAAAGACGAGTTTTCGGGTTCGCTATCTACTGTACCAGATAAGTCACGGGCTTCTTCTCTACCTCCAATTCCCAAAACTGAGCTCATGCTTGTGGACCCACCATCTGACATGAAACGATTGGTTGAAAAGATAGTGGAATTCATCATCAAGAACGGGAGGCAGTTTGAGGCTGTACTTATGGAACAAGACCGTGGTCATGGAAGATTCCCATTTTTAATCCCATCTAATATATTCCACCCATACTACCTGAAAGTTCTCCAGAAAACTCAAGAGTCGAAACTAACTGTCAAAAGCTTTTACAATGAGAAAGAAGATTCCAGAGGACATATCTCAAACAAGAAAAAGTCCATCTCGAATGAGAATGATAGGATGGAATCTGATGATATACCACTTGATGAAAGAAAAGAGAAGTTTAAGATGGTAATTAACAAGTCTAAGAAAGAAGGATCAGATTTGCCAGCTAAGTCCACAGAATCGCCACCTAGAATCCAGGTGGATGCCAATCAAGCAGCAGCAATTCTTCAAGCTGCTACCAGAGGCATTAAGCCTTCCAATTTAGGATTTCTGTATGGGCAACCATCTAATGAAGACGGTTCCTCCGAGTCACAGTTGACCCAGGAGCAGAAATTAAAGGCTGAAAGACTGAAACGGGCCAAGATGTTTGTGGCCCAGCTGAAAAGTGGAGCAGCTCCATTACAAGTGGGACCCTCACGTGGCTCATCAGCCGAGCCACAAGCTGACAACCGCCTTACAGCCAAAAAAACTGAGAAGAGCACACTCCCTTCAGACGTTGATACTTCAGATAATAAATTAAAATCAGAAAGAGAACACTTGAATGAAGAAAAACGATCAATGAGAAAATACCGAGCTCGTTCTACCAGAGAAGACAAAAAAGATGACAATGATGATGATGATGCTGACGATGATGAGAGAGAAAGAAAAAGATCACATAGACACCATACGAAAAAACACCGATCTAATAACCATTCAGTTGAAGTTGAGGGAGAAGAAAAATACCTAGATGAGAGAGACGACAAGCATGCAAAAAGAAGACATCGATCTCGTTCTTCCCATAAACATGATGATGTGGACAAAATCCCTGAAGACAAGGATCAAAAGTATTCAAAGTTGAAGCATCGATCTTCTAGCTCTTATGAAGACGAGGAACAGGAAAGTGAACATGATTATTCTAGAAAGAAACACCGATCACATCATTCTTCACACGATGAAGCTGACAGTGACGATAAATATTCTAGGAAAAAACGAAAACATGGATCCCACAAATCTTCTCATAGGCATAAGCATAGGAAAAGTCACTCTTCTAGGCATACAGAGAAGCTTGATGTGTCTTCAGAAGAGGAGTCGAGGGGCGAGAATAAGGCTGATAAGAATGTTAAGGGACCAAACTCGGAAAGAGAAGAACTTGAAGAAGGGGAGATAACGGGCCCGTCAAAAGGGGCTACTAGAGAACCTTCGTTTGATGCACCAAATTCTTTTCAAGATCCGAGGCCGCTGACTCAGCCATCCGCTGCAACTGAGGTCCCTGATGATCTCAGGGCCAAAATCAGAGCAATGCTGATGTCAACAATGTAA 2478 43.18 MNIEIHGRHALLFDDDASAAFVNSDDALVEWNSLLIDRYDVRHLLSSPPPSRRRRNPQTSHSSSADADIDYERYLDLPSPSEEEEEDAKPEPIGGFNAVAFSYGNDEDSNDHKTAETDPEVPKFHPPFPVPDSLVQNLPPTEKVHQIIARTALYVSKNGGQSEIILRVKQGDNPTFGFLMPDHHLHSYFRFLVDNQDLLHSKDNGQLENEEKISHTGALSLLGSVYGTGEDDDGETEHLSSSSSKECVSGNTVNVDVTVSLAAVKPMLPSDKDEPILKRNSLSNALKTGRTSSIKKDEFSGSLSTVPDKSRASSLPPIPKTELMLVDPPSDMKRLVEKIVEFIIKNGRQFEAVLMEQDRGHGRFPFLIPSNIFHPYYLKVLQKTQESKLTVKSFYNEKEDSRGHISNKKKSISNENDRMESDDIPLDERKEKFKMVINKSKKEGSDLPAKSTESPPRIQVDANQAAAILQAATRGIKPSNLGFLYGQPSNEDGSSESQLTQEQKLKAERLKRAKMFVAQLKSGAAPLQVGPSRGSSAEPQADNRLTAKKTEKSTLPSDVDTSDNKLKSEREHLNEEKRSMRKYRARSTREDKKDDNDDDDADDDERERKRSHRHHTKKHRSNNHSVEVEGEEKYLDERDDKHAKRRHRSRSSHKHDDVDKIPEDKDQKYSKLKHRSSSSYEDEEQESEHDYSRKKHRSHHSSHDEADSDDKYSRKKRKHGSHKSSHRHKHRKSHSSRHTEKLDVSSEEESRGENKADKNVKGPNSEREELEEGEITGPSKGATREPSFDAPNSFQDPRPLTQPSAATEVPDDLRAKIRAMLMSTM 825
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi23g00565 825 MobiDBLite consensus disorder prediction 622 643 - -
Dapi23g00565 825 MobiDBLite consensus disorder prediction 715 736 - -
Dapi23g00565 825 MobiDBLite consensus disorder prediction 51 65 - -
Dapi23g00565 825 Pfam Alternative splicing regulator 3 87 IPR019147 -
Dapi23g00565 825 SMART surpneu2 145 198 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Dapi23g00565 825 SMART surpneu2 333 386 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Dapi23g00565 825 Pfam Surp module 146 194 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Dapi23g00565 825 Pfam Surp module 333 382 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Dapi23g00565 825 MobiDBLite consensus disorder prediction 106 120 - -
Dapi23g00565 825 MobiDBLite consensus disorder prediction 483 501 - -
Dapi23g00565 825 MobiDBLite consensus disorder prediction 439 458 - -
Dapi23g00565 825 SUPERFAMILY Surp module (SWAP domain) 122 194 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Dapi23g00565 825 MobiDBLite consensus disorder prediction 652 693 - -
Dapi23g00565 825 ProSiteProfiles SURP motif repeat profile. 147 189 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Dapi23g00565 825 MobiDBLite consensus disorder prediction 398 427 - -
Dapi23g00565 825 ProSiteProfiles SURP motif repeat profile. 335 377 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Dapi23g00565 825 MobiDBLite consensus disorder prediction 524 812 - -
Dapi23g00565 825 MobiDBLite consensus disorder prediction 482 503 - -
Dapi23g00565 825 PANTHER SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT 3 779 IPR040397 GO:0000395(PANTHER)
Dapi23g00565 825 MobiDBLite consensus disorder prediction 786 802 - -
Dapi23g00565 825 MobiDBLite consensus disorder prediction 737 775 - -
Dapi23g00565 825 MobiDBLite consensus disorder prediction 45 122 - -
Dapi23g00565 825 MobiDBLite consensus disorder prediction 225 248 - -
Dapi23g00565 825 Gene3D Surp module 321 390 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Dapi23g00565 825 SMART DRY-EERY-2 1 107 IPR019147 -
Dapi23g00565 825 MobiDBLite consensus disorder prediction 700 714 - -
Dapi23g00565 825 Gene3D Surp module 140 195 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Dapi23g00565 825 Coils Coil 566 586 - -
Dapi23g00565 825 SUPERFAMILY Surp module (SWAP domain) 306 382 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Dapi23g00565 825 MobiDBLite consensus disorder prediction 544 594 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi23g00565 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
251783 Dapi7g00545 Dapi23g00565
387176 Dapi23g00565 Dapi7g00545
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr7:11825477 Dapi23g00565 Dapi-Chr23:12563009 transposed
Dapi Dapi-Chr23:12563009 Dapi7g00544 Dapi-Chr7:11822184 wgd