AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi23g00566 ATGATCGCACAGATGGAGCTTAAAGCGCGTGATTACAGAGCTGAAGAAGAAGCCTATTCACTCACACGAGTTTCAGTATCTTCACATCCTCTTTGTTCGTCTTCAATTTTATCAGATACACAGGATGATGTGAGTATCGAATTCTTTGATCCCTTAAGGGGTTTATCAACAGAAATACCTGAGCCTGTTGAAGATATGACTGTTGCAGAAAAACATCCTGCTAGTCAACCGACTTCTCATCTGTCAGCAAAGGAATGGACATCTTTCAATAAGTTATTAATGCAGAGATTTCCGGTGCCAAAAATGATTTCAGTTTCTGCTTTGTCCAGCAAAACTATAAAGGGCAAGAAGGCAATCGGAGAACTACCAGCAAATACGCAGTCAGATGAACTGAACGATTCTGAAAAGTTGACTGAAAAAGGATTTAAGACAGTAAGCCAGCAGGAGTATATAAAACGATTGCATGAACTTAAAGACGAGATCATGCGTTCTTGGCGTTCTGGTGAGCGTGTAACATCTTTAAAGTTGTCAATTAAGGTTGCTAGGCTTCTGATGGACACCTGTGTGGCACAGTTTTATCCAACTTTATTTGTTCTAGCTACTGATATAATGGACATGTTAGGTGATATGGTATGGGAGCGAATTAGGGAGAAAGCTGAGTTTGCAGATGACGGAACCAAGATTTGCACTTTATCAGATGACTTTGAAGCAAATAGTATATGCCTTGAAGCCAAAGAGACATGCAATAACTGGTTCAGAAAAATTGCCTCCATCCATGAGCTACTTCCACGCATATATCTTGAGCTTGCTATATTTCCATGCTGGCGGTTCCTGCGTGATGATGTCACGGATAACCTCATGCGTATGGTTATGATGATAAGAGGAATTGCGGATCCATTAGCATCAGCCTACTGCCGCTTCTTTTTGATTCACTGTGCCCAAAAACTTCCCCAACGTGATACAGGGCATCTAGTAACTTGCATCAGTGATCAAAAAATTATACTTTGGAAAATTGTATCTACAAAAGCAACCAAGTATGGGAACTTTTTGGGAGATCACAAGTTGCTTATCAGCTTGATGGAACCAACAATCGAGTATACTATGAGATGCATTTTTAAGGATCCAAATAAGGTTGCTGATATGATTGTGAGACTTGAACTAGGAAAAAGCTCGTTAGAGTTACATGGGAAAGTTCCTTTGATATCAATAATCCTCCATTATTTACTCAAAGAGCTCCCAACTGAAGTAGTTTGTTCCAATGCTTTAGAAATTCTTCACCTTGTTGACCGCAGTAGTGATTTTTCGTTTGACCAGTGTTTAAATTACAAGATGGTTGGGTTGAAGCTTTGTGAGGGAATTGATCAAGTGCACACAGTTAATGCAGTAATTGATGAAGTAATTCAGGCTGCTACTAAAAGGAAGATCCTTGATGAGTACTTGAAGATCTTGGATGCTTATATGGAAATTATTCTTCATTATAAGATGGATCGATCTCTAAGTTCCATTCTAAGTGAAATATTTGAAAGATTGTGCAATGAAGTGGTTACTGAAGATGAACTGGCTAGCCTGCAGTCAATTGTTGTGAAGCTGGTCACACATTTTGATGATATGAAATGTGTTTTTGACCTGAATTATTTTGTTGACATATTAGATGTCATGCATGGGAGCTCGAGAAGCATTGTATGTATGTACATCCTCACTAATGCCACAAGAAAGGATTGCATTGATGATCCTACCACTGTAAAACTGCTTTTTGATGTTGCTCAGTCTCTGCATGATAATGTTGACTTTTCAAACACGAGACAGGATGATAATCAACAGGCAGAGCGTTTGGTTGCTCGTTTTATTGATAAGGTTGACCATGGTATGGAGTTTGATCGCCATTTGACATTTTTGGTTGAGTGTCGTGGAGCTTTCAGTAGCATGAATGATTTGAAGGAGATCCTTGTTCATTCGAGCAATCTTTTAGCTACCAGAGCTTTGAGAGAGAAAAAAAACAATCTCAATTTTATCAAATCTTGCATCACTTTTAATGAAGTTACAATACCATGTATTCCATCTTATTCCAGGCAGTTAATCTTATATCTTGAAACCGCAGAGGTTTCTTTGTTTGGAGGCTTGATTTCTCATTCAGATGGACTTCTAGATTCTGCAGTCTGCTGCTTACAAAATGTTTATTTGGTAGATGGTTTGCGGAAATCCAATGAAGATGCTGATGGTATTGTTTCATTAACTAGAAAGCTATGCAGCTTCATGCTCTTGGTTCCAGGTAATTTGGAACAAGGAGCTATGTACATTCCAAAGAGCATATTATCCTTGCTTGATTCACAATCATGGGTTACACCAAAACTAAGGATAAGAATCTTATGTTCTCTTCTTTCATTATCTGCAACATTTGCTCAAAATGAGCTCCCATACCATTCAATTCATGAAGAGGTTATTGGCAACGACCGTTTATTTCTTGGTGATGCAATGTATTCCCAAGAACTCGGGTCGTTATCTAGGGTTATTCTACATAACATAGTTGATACTATTTCACAAGAACCTTCACAGGTTACGCGAGGAAAACTGGCACTCGAAGCTTGCAACTGTATCGCCTCATTTTTTAAGGTGAATCTTGAGATATCATCTGTTTGCTCTAAGTTGATGGCAACGGCTGTATCATGTCTTGGAGGTGATGATAAATACTTGCAGTCAACTATTGATTTTGTGCATAAACAGTCCCCAATATATGCTGGGGGAGAATGA 2748 38.72 MIAQMELKARDYRAEEEAYSLTRVSVSSHPLCSSSILSDTQDDVSIEFFDPLRGLSTEIPEPVEDMTVAEKHPASQPTSHLSAKEWTSFNKLLMQRFPVPKMISVSALSSKTIKGKKAIGELPANTQSDELNDSEKLTEKGFKTVSQQEYIKRLHELKDEIMRSWRSGERVTSLKLSIKVARLLMDTCVAQFYPTLFVLATDIMDMLGDMVWERIREKAEFADDGTKICTLSDDFEANSICLEAKETCNNWFRKIASIHELLPRIYLELAIFPCWRFLRDDVTDNLMRMVMMIRGIADPLASAYCRFFLIHCAQKLPQRDTGHLVTCISDQKIILWKIVSTKATKYGNFLGDHKLLISLMEPTIEYTMRCIFKDPNKVADMIVRLELGKSSLELHGKVPLISIILHYLLKELPTEVVCSNALEILHLVDRSSDFSFDQCLNYKMVGLKLCEGIDQVHTVNAVIDEVIQAATKRKILDEYLKILDAYMEIILHYKMDRSLSSILSEIFERLCNEVVTEDELASLQSIVVKLVTHFDDMKCVFDLNYFVDILDVMHGSSRSIVCMYILTNATRKDCIDDPTTVKLLFDVAQSLHDNVDFSNTRQDDNQQAERLVARFIDKVDHGMEFDRHLTFLVECRGAFSSMNDLKEILVHSSNLLATRALREKKNNLNFIKSCITFNEVTIPCIPSYSRQLILYLETAEVSLFGGLISHSDGLLDSAVCCLQNVYLVDGLRKSNEDADGIVSLTRKLCSFMLLVPGNLEQGAMYIPKSILSLLDSQSWVTPKLRIRILCSLLSLSATFAQNELPYHSIHEEVIGNDRLFLGDAMYSQELGSLSRVILHNIVDTISQEPSQVTRGKLALEACNCIASFFKVNLEISSVCSKLMATAVSCLGGDDKYLQSTIDFVHKQSPIYAGGE 915
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi23g00566 915 PANTHER ESOPHAGEAL CANCER ASSOCIATED PROTEIN 5 907 IPR029705 GO:0005768(PANTHER)|GO:0032456(PANTHER)|GO:0032456(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi23g00566 K25731 VPS35 endosomal protein-sorting factor-like
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Event-related genes

Select Gene_1 Gene_2 Event_name
251784 Dapi7g00546 Dapi23g00566
387177 Dapi23g00566 Dapi7g00546
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr20:30740541 Dapi23g00566 Dapi-Chr23:12574279 dispersed
Dapi Dapi-Chr20:58283518 Dapi23g00566 Dapi-Chr23:12574279 dispersed
Dapi Dapi-Chr23:12574279 Dapi4g00973 Dapi-Chr4:38712642 dispersed
Dapi Dapi-Chr23:12574279 Dapi7g00546 Dapi-Chr7:11831045 wgd