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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi23g00574 ATGAATAGTAATCCTTCTACGCCGATGAACGCAAACGCTCCGTCGTCAAGCTCCGGTGGCGCCGGATCACCTGATTCAAATACTCCGAGGAGAAATTCGAAGCGACCTAAATATTCTAGGTTTACACAGCAAGAATTACCAGCTTGTAAGCCAATTCTTACACCGAAATGGGTGATTTCAGCATTCATGCTTGTGACAATTGTCTTTATACCTATAGGACTTACTTCACTCCTTGCTTCTCGTGATGTGGTTGAAATTGTTGACCGGTATGATAATGCCTGTGTAACGGGCTCAAAGAGTCAAAAGGTCCAACATATACAAAACCAGGCCTCAAATAAAACCTGCGTCAGAACCTTGACAGTCAGAAAGAGAATGAAGCAGCCTATTTATGTATATTATCAGCTTGACAATTTCTATCAGAATCACCGCAGGTATGTCAAGAGCCGAAGTGATCAGCAACTGAGAAACCGTGGTGATGAGAATGACACAAGTACATGTAAGCCTGAACATGAAGCAAATGGGATGTCAATAGTGCCATGTGGACTTGTAGCCTGGAGTTTGTTCAATGACACTTATAGGCTCTCCACCAGTAACAACCGTCAATTAACCATAAACAAGCGGGAGATTTCATGGAAGAGTGACAGGGATGAAAAGTTTGGCAGTGATGTCTTCCCAAAAAATTTCCAAAACAGTAGTTTTATTGGTGGTGGGAGTCTCATTGCAGACGTACCATTAAATCAGCAAGAAGACCTTATTGTTTGGATGCGAACTGCTGCTCTCCCAACGTTTAGGAAACTGTACGGGAAAATTGAGCAGGATATTGAGGCAGGTGAAACAATAAATGTGGTATTGGAGAACCGTTACAACACTTACAGTTTCAGTGGCAAGAAGAAACTTGTGCTTTCAACTACTAGCTGGCTTGGCGGGAAAAATAACTTTATTGGCATCGCTTATCTGGCAGTTGGTGGTTTGTGCTTCTTACTAGCTGCCACTTTCACCATCATATATTTTGTTAAGCCAAGGCATCTTGGAGATCCAAGTTATTTGTCATGGAACCGAAACCCAGGTGGTCACTGA 1077 42.62 MNSNPSTPMNANAPSSSSGGAGSPDSNTPRRNSKRPKYSRFTQQELPACKPILTPKWVISAFMLVTIVFIPIGLTSLLASRDVVEIVDRYDNACVTGSKSQKVQHIQNQASNKTCVRTLTVRKRMKQPIYVYYQLDNFYQNHRRYVKSRSDQQLRNRGDENDTSTCKPEHEANGMSIVPCGLVAWSLFNDTYRLSTSNNRQLTINKREISWKSDRDEKFGSDVFPKNFQNSSFIGGGSLIADVPLNQQEDLIVWMRTAALPTFRKLYGKIEQDIEAGETINVVLENRYNTYSFSGKKKLVLSTTSWLGGKNNFIGIAYLAVGGLCFLLAATFTIIYFVKPRHLGDPSYLSWNRNPGGH 358
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi23g00574 358 MobiDBLite consensus disorder prediction 148 167 - -
Dapi23g00574 358 PIRSF Lem3-Cdc50 7 354 IPR005045 GO:0016020(InterPro)
Dapi23g00574 358 Pfam LEM3 (ligand-effect modulator 3) family - CDC50 family 77 341 IPR005045 GO:0016020(InterPro)
Dapi23g00574 358 PANTHER CELL CYCLE CONTROL PROTEIN 50 29 350 IPR005045 GO:0005783(PANTHER)|GO:0005794(PANTHER)|GO:0005886(PANTHER)|GO:0016020(InterPro)
Dapi23g00574 358 MobiDBLite consensus disorder prediction 1 29 - -
Dapi23g00574 358 MobiDBLite consensus disorder prediction 148 170 - -
Dapi23g00574 358 MobiDBLite consensus disorder prediction 1 41 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi23g00574 K26935 cell cycle control protein 50
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Event-related genes

Select Gene_1 Gene_2 Event_name
79393 Dapi23g00574 Dapi28g01313
251789 Dapi7g00553 Dapi23g00574
387182 Dapi23g00574 Dapi7g00553
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr23:12735482 Dapi26g01764 Dapi-Chr26:45501114 dispersed
Dapi Dapi-Chr1:23375522 Dapi23g00574 Dapi-Chr23:12735482 wgd
Dapi Dapi-Chr12:101637200 Dapi23g00574 Dapi-Chr23:12735482 wgd
Dapi Dapi-Chr17:23489492 Dapi23g00574 Dapi-Chr23:12735482 wgd
Dapi Dapi-Chr23:12735482 Dapi28g01283 Dapi-Chr28:90689768 wgd
Dapi Dapi-Chr23:12735482 Dapi28g01313 Dapi-Chr28:91288085 wgd
Dapi Dapi-Chr23:12735482 Dapi7g00553 Dapi-Chr7:11930070 wgd