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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi23g00587 ATGGGTGACAGTCAGTACTCCTTTTCCCTTACTACTTTCAGTCCTTCTGGAAAGCTTGTTCAGATTGAACATGCCCTAACAGCTGTTGGCTCTGGTCAAACTTCATTGGGGATAAAAGCTTCTAATGGGGTGGTAATTGCAACCGAAAAGAAGCTCCCATCCATTTTAGTTGACGAGACATCGGTGCAAAAGATCCAGATTTTGACTCCTAATATTGGAGTCGTTTACAGTGGGATGGGGCCCGATTCACGAGTTTTGGTCAGAAAGAGTAGGAAGCAGGCAGAGCAATACAATTTGCTATACAAAGAACCAATCCCTGTTACGCAACTTGTAAGGGAAACTGCTGCTGTTATGCAAGAGTTTACTCAATCAGGTGGTGTAAGGCCTTTTGGTGTTTCACTCCTTGTTGCTGGTTACGATGACAAAGGTCCCCAACTTTATCAGGTGGATCCCTCAGGTTCATATTTCTCATGGAAGGCTTCAGCCATGGGAAAGAATGTATCCAATGCAAAGACATTTCTTGAAAAGAGGCATGTCATTATTAGTTTAAAAAAAATTGCAACTTTGGATTATGTTCTTACTTATTGTAGTTGTGATCGTCCAACAGCTTGTCTTAAGAATGATGATGTTGCTTGTAGGTACACTGATGATATGGAGCTTGAAGATGCGATACACACAGCTATTTTAACATTGAAGGAGGGATTTGAAGGACAAATATCTGGTAAAAACATCGAGATTGGTGTTATCGAGGCTGACAGAACATTCAGAGTCCTGACTGCAGCTCAAATTGAAGACTATCTTCAAGAGGTGGAGTAG 816 41.54 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDETSVQKIQILTPNIGVVYSGMGPDSRVLVRKSRKQAEQYNLLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRHVIISLKKIATLDYVLTYCSCDRPTACLKNDDVACRYTDDMELEDAIHTAILTLKEGFEGQISGKNIEIGVIEADRTFRVLTAAQIEDYLQEVE 271
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi23g00587 271 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 5 270 IPR029055 -
Dapi23g00587 271 ProSitePatterns Proteasome alpha-type subunits signature. 6 28 IPR000426 GO:0006511(InterPro)|GO:0019773(InterPro)
Dapi23g00587 271 CDD proteasome-alpha-type-2 6 267 - -
Dapi23g00587 271 Pfam Proteasome subunit 31 177 IPR001353 GO:0005839(InterPro)|GO:0051603(InterPro)
Dapi23g00587 271 Pfam Proteasome subunit A N-terminal signature 6 28 IPR000426 GO:0006511(InterPro)|GO:0019773(InterPro)
Dapi23g00587 271 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 1 271 IPR029055 -
Dapi23g00587 271 SMART Proteasome-A-N-2 6 28 IPR000426 GO:0006511(InterPro)|GO:0019773(InterPro)
Dapi23g00587 271 ProSiteProfiles Proteasome alpha-type subunit profile. 21 267 IPR023332 -
Dapi23g00587 271 PANTHER PROTEASOME SUBUNIT ALPHA-BETA 4 268 IPR050115 GO:0010498(PANTHER)|GO:0019773(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi23g00587 K02726 20S proteasome subunit alpha 2 [EC:3.4.25.1]
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Event-related genes

Select Gene_1 Gene_2 Event_name
251796 Dapi7g00568 Dapi23g00587
387189 Dapi23g00587 Dapi7g00568
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr23:12910598 Dapi26g01661 Dapi-Chr26:39012813 dispersed
Dapi Dapi-Chr23:12910598 Dapi7g00568 Dapi-Chr7:12091453 wgd