AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi23g00663 ATGGAAGAATCGCAAGAGATATTATTGAACTCGCTGGCAAAAGTCGGAGTTCCGATCCCGCCGGAAGTTCTCTCCGTTGAAGATCTAACGCCGGAAGCCTTGGTGTCGATCTGTGCTCATTCGCTTCGTATAATTTCCAACTCGGAATCGATTCCGATCACTTTACCGGACTCTATGGCCGATCGTTTCACTGTATGCACCGATCTCGCCTCGTCCGTCAAAGACCTAGGTTACATCGGCGACATGAGCTTTCATAAGTTCCTGTATCCATCTGAAGAAGACATGTATAAGTTGATTAGATTTTTGGTTGGGAGGCTCTCTGAATCATCTCGAACTGCAGTATCACCAGAAACAAAGGATAATAATGCCACTGCAACGGTAAATGTTGATAATCTGGAAATATCTATTAAGGATGCTGATGATGAGGGACAGGATTTGCATACTAAAGTTGAAGACATGAAACTGAGAACTGATGAGGTGACATCACATTCAATTCAGTATGCTGAAGATGTTGTGATTGGTAACGGTGATATAAGAGAGAATTCAGAAACTAATAATGTCAGAGTAACTGGTGTGGAAACTGGTAGAGGTTTAACAGATGATACTCAGGAAGATGGTCAACATAAACTTGAGCAGTCAACGATGTCGATTTCTCTCCAAGACAAATCATCCCAGGCGAGTGACATGACAGAAATATCAATAAATCAAGAAAATGTGTTTTCGGATGAAACAAAGGCAAAATCATTGATGTTACAACAACTGGAAGAGCAACATGATTTGTTAAAAGCAGCAATGGAAATGGCTTGTGATGAACAAACACCTTTGGAGTCCTACATTACACAGCTCAGCAAGCAAATAGATGCAAAGAGACATAATCTAGCAGAAATGGAGTCAAAATGGAAAGCCATCATAGATCCTTTACAAGAGAAGAAAAGAAACTATGAAGAAGCTCTATGTGCAAAACAACCAGAGTCTCAAGAAAAACATCAACAGTGGAAAAAACACGAGCAGGACTTGGAGTCTACATTGTTTGAAACAAATGAAAGGGAAAAGGAACTTTCCAATTTGTCAACAGAAATTGAGAAACTACCCAAGTTGGCATCTAGAAGATCCTACATTGAGCGGATAAAAGAGATTACTAAAAACAGCCGAAAACAGGACATTGACATAGAGCGTATTTTAAAAGATACCAGAGATCTTCAATTGGAGAGCAACATGATTCAAGAACGCCTGCATCGAACTTACGCCGTGGTAGATGAAACACTTCTTAGGGAAGCAAAGAAGGACCAAGTAGGTGAGCAAGCTCACATTTTGCTGACGACCATCCACGAGAGTTTTCAAGAAATTTCAGAAAAAATCCTTGCAACTGACAGAACGCGTAGAGAAGAAACAGATCTCGAAACTAAGCTTTCAAGTATTGCTACTCGAAGTTTAAATATGGACAAACTACAATCAGATCTTGATGCCATCAGGAAAGAAAACGAATACCTTGAATCTCGTTTGGGTAATCTTTAA 1515 40.0 MEESQEILLNSLAKVGVPIPPEVLSVEDLTPEALVSICAHSLRIISNSESIPITLPDSMADRFTVCTDLASSVKDLGYIGDMSFHKFLYPSEEDMYKLIRFLVGRLSESSRTAVSPETKDNNATATVNVDNLEISIKDADDEGQDLHTKVEDMKLRTDEVTSHSIQYAEDVVIGNGDIRENSETNNVRVTGVETGRGLTDDTQEDGQHKLEQSTMSISLQDKSSQASDMTEISINQENVFSDETKAKSLMLQQLEEQHDLLKAAMEMACDEQTPLESYITQLSKQIDAKRHNLAEMESKWKAIIDPLQEKKRNYEEALCAKQPESQEKHQQWKKHEQDLESTLFETNEREKELSNLSTEIEKLPKLASRRSYIERIKEITKNSRKQDIDIERILKDTRDLQLESNMIQERLHRTYAVVDETLLREAKKDQVGEQAHILLTTIHESFQEISEKILATDRTRREETDLETKLSSIATRSLNMDKLQSDLDAIRKENEYLESRLGNL 504
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi23g00663 504 Coils Coil 251 271 - -
Dapi23g00663 504 Pfam CCDC22 protein N-terminal domain 1 107 IPR048349 -
Dapi23g00663 504 Coils Coil 279 299 - -
Dapi23g00663 504 Pfam CCDC22 protein coiled-coil region 104 475 IPR048348 -
Dapi23g00663 504 PANTHER JM1 PROTEIN 186 502 IPR008530 GO:0097602(PANTHER)|GO:2000060(PANTHER)
Dapi23g00663 504 Coils Coil 122 142 - -
Dapi23g00663 504 Coils Coil 480 500 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi23g00663 K23343 coiled-coil domain-containing protein 22
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Event-related genes

Select Gene_1 Gene_2 Event_name
251837 Dapi7g00649 Dapi23g00663
387230 Dapi23g00663 Dapi7g00649
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr23:15416304 Dapi7g00649 Dapi-Chr7:14394296 wgd