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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi23g00775 ATGGATAGTTCCTTCGCGTCTTCTCCGCCTACAACCACCGCATCTCCGTCGTGCGTAATCGTAACATACCGTCCATTTCCGCTCTGCTTATTGCTCCTTACCTTCAATTTCAGAGTATATAGAATGGCAATCTTAGGTTGTGCTGGTACGTCGGTGGCGCTATGGGGAGTTCAACCTCAGTCAATGTTGAGTGTTTCTTTAGGTAGCAAGCCGTTTGCTCATTTGCCTCGTTTCTCAACAAAGACAAGAGGATTTGCATCATCATATTCAAGCTTCTTCTCACAACATTCCTTGCATGCACTATATCATATGAGGTCTTCAAGTGGTAATTTTCATAATCGCAGAGGTAGCAGCCTCATTGTTAGAGCTGAAGCAGATTTCTATTCAATACTTGGGGTATCAAAGAATGCAAGCAAACCAGAAATCAAGAGTGCTTACAGGAAACTTGCAAGGAGTTATCATCCTGACGTGAACAAAGAGCCAGGAGCTGAACAAAAGTTCAAGGACATTAGCAATGCTTATGAGGTTTTATCAGATGATGAAAAACGATCCATATATGACAGGTATGGTGAGGCTGGGCTTAAAGGTGCTGGCATGGGGGGCACAGGGGATTTCAGCAACCCGTTTGATATCTTCGAGTCATTATTTGACATGGGTGGTATGGGTGGTATGGGTATGGGAGGGCGAGGCTCACGTAACATGGCTACAGAAGGTGAAGACCAGGGTTACAATCTGGTCTTAAACTTCAAAGAAGCCGTGTTTGGTGCTGAAAAAGAAATTGAAATAACCAAACTCGACACCTGTAAAACTTGCGACGGGTCGGGTGCCAAGCCCGGCACCAAATCGTCTAGATGCTCGGCATGTGGCGGTCAAGGTCAAGTCATCACATCAGCCAGAACTCCGTTAGGTGTTTTTCAGCAAGTATCAACATGCTCTTCTTGTGATGGAAGTGGAGAAATTTCTACCCCTTGTGATACATGTAAAGGAGACGGGCGCGTAAGGAAGTCAAAGAAAGTCAGCCTTAAAGTCCCGGCTGGGGTAGATTCGGGTAGCCGGTTAAGGGTTCGGTCAGAGGGTAACGCCGGAAGGAGAGGCGGCCCCCCTGGCGACCTTTTTGTAATGATTGATGTGCTTCCAGACCCTGTATTAAAACGGGACGACACAAACATTCTTTATACTTGTAAAATCTCGTATCTTGATGCTATACTGGGGACAACAGTGAAGGTGCCAACAGTGGACGGGACGGTTGATTTGAAAATCCCGAGTGGGACACAGCCGGGGACGACATTGGTGATGGCGAAGAAGGGGGTCCCGCTTTTGAACAAGAGCAACAAGAGGGGTGATCAGCTGGTTAGAGTGCAAGTCGAGATACCGAAACGTGTAACTGGTGAAGAAAAGAAGCTAATTGAAGAATTGTCAAATCTTAAGAAGGGTACAGTTGCAAGTAGCACTAGATAA 1458 46.3 MDSSFASSPPTTTASPSCVIVTYRPFPLCLLLLTFNFRVYRMAILGCAGTSVALWGVQPQSMLSVSLGSKPFAHLPRFSTKTRGFASSYSSFFSQHSLHALYHMRSSSGNFHNRRGSSLIVRAEADFYSILGVSKNASKPEIKSAYRKLARSYHPDVNKEPGAEQKFKDISNAYEVLSDDEKRSIYDRYGEAGLKGAGMGGTGDFSNPFDIFESLFDMGGMGGMGMGGRGSRNMATEGEDQGYNLVLNFKEAVFGAEKEIEITKLDTCKTCDGSGAKPGTKSSRCSACGGQGQVITSARTPLGVFQQVSTCSSCDGSGEISTPCDTCKGDGRVRKSKKVSLKVPAGVDSGSRLRVRSEGNAGRRGGPPGDLFVMIDVLPDPVLKRDDTNILYTCKISYLDAILGTTVKVPTVDGTVDLKIPSGTQPGTTLVMAKKGVPLLNKSNKRGDQLVRVQVEIPKRVTGEEKKLIEELSNLKKGTVASSTR 485
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi23g00775 485 PRINTS DnaJ domain signature 182 201 IPR001623 -
Dapi23g00775 485 PRINTS DnaJ domain signature 128 146 IPR001623 -
Dapi23g00775 485 PRINTS DnaJ domain signature 146 161 IPR001623 -
Dapi23g00775 485 PRINTS DnaJ domain signature 162 182 IPR001623 -
Dapi23g00775 485 FunFam Molecular chaperone DnaJ 260 336 - -
Dapi23g00775 485 Pfam DnaJ central domain 268 331 IPR001305 GO:0031072(InterPro)|GO:0051082(InterPro)
Dapi23g00775 485 Pfam DnaJ C terminal domain 243 458 IPR002939 -
Dapi23g00775 485 ProSiteProfiles dnaJ domain profile. 126 190 IPR001623 -
Dapi23g00775 485 FunFam Chaperone protein dnaJ 1, mitochondrial 378 485 - -
Dapi23g00775 485 Gene3D - 238 373 - -
Dapi23g00775 485 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 87 477 - GO:0005737(PANTHER)|GO:0009535(PANTHER)|GO:0042026(PANTHER)|GO:0051082(PANTHER)|GO:0051085(PANTHER)
Dapi23g00775 485 Gene3D - 378 484 - -
Dapi23g00775 485 FunFam Putative Mitochondrial DnaJ chaperone 324 373 - -
Dapi23g00775 485 CDD DnaJ-zf 268 331 IPR001305 GO:0031072(InterPro)|GO:0051082(InterPro)
Dapi23g00775 485 Gene3D DnaJ domain 123 228 IPR036869 -
Dapi23g00775 485 Gene3D - 268 331 - -
Dapi23g00775 485 SUPERFAMILY DnaJ-Hsp40 cysteine-rich domain 255 335 IPR036410 -
Dapi23g00775 485 CDD DnaJ-C 239 460 - -
Dapi23g00775 485 SUPERFAMILY Chaperone J-domain 123 226 IPR036869 -
Dapi23g00775 485 Hamap Chaperone protein DnaJ [dnaJ]. 123 478 IPR012724 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0009408(InterPro)|GO:0051082(InterPro)
Dapi23g00775 485 CDD DnaJ 126 179 IPR001623 -
Dapi23g00775 485 SMART dnaj-3 125 182 IPR001623 -
Dapi23g00775 485 ProSitePatterns Nt-dnaJ domain signature. 167 186 IPR018253 -
Dapi23g00775 485 ProSiteProfiles Zinc finger CR-type profile. 255 336 IPR001305 GO:0031072(InterPro)|GO:0051082(InterPro)
Dapi23g00775 485 Pfam DnaJ domain 126 187 IPR001623 -
Dapi23g00775 485 FunFam Chaperone protein dnaJ A6 chloroplastic 123 228 - -
Dapi23g00775 485 SUPERFAMILY HSP40-DnaJ peptide-binding domain 236 389 IPR008971 GO:0006457(InterPro)|GO:0051082(InterPro)
Dapi23g00775 485 SUPERFAMILY HSP40-DnaJ peptide-binding domain 383 469 IPR008971 GO:0006457(InterPro)|GO:0051082(InterPro)
Dapi23g00775 485 NCBIfam molecular chaperone DnaJ 126 474 IPR012724 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0009408(InterPro)|GO:0051082(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi23g00775 K03686 molecular chaperone DnaJ
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr18:10699722 Dapi23g00775 Dapi-Chr23:19648092 dispersed
Dapi Dapi-Chr18:23039393 Dapi23g00775 Dapi-Chr23:19648092 dispersed
Dapi Dapi-Chr22:6987189 Dapi23g00775 Dapi-Chr23:19648092 dispersed
Dapi Dapi-Chr23:19648092 Dapi6g00966 Dapi-Chr6:15265569 dispersed
Dapi Dapi-Chr2:24916187 Dapi23g00775 Dapi-Chr23:19648092 wgd
Dapi Dapi-Chr23:19648092 Dapi7g00761 Dapi-Chr7:18238798 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Dapi31g01131 DST 14 231 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 40.724 7.45e-47 158.0
Dapi18g01792 . 7 207 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 31.535 5.76e-29 115.0
Dapi1g01404 DST 8 147 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 52.083 1.73e-40 143.0
Dapi12g01306 . 5 206 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.663 7.83e-31 120.0
Dapi12g01630 . 7 202 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 30.0 3.48e-23 99.0
Dapi13g01153 . 7 311 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 46.023 7.87e-97 288.0
Dapi13g01190 . 23 234 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT5G64360 28.099 5.64e-23 101.0
Dapi13g01311 . 7 141 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 37.778 1.55e-24 96.3
Dapi32g02171 . 5 221 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 35.945 4.54e-32 124.0
Dapi2g03851 . 7 199 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 35.047 3.89e-32 125.0
Dapi32g00739 DST 35 136 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.654 1.78e-12 63.9
Dapi32g00782 . 3 202 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 31.5 3.46e-26 107.0
Dapi8g00110 . 7 208 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.036 9.36e-32 124.0
Dapi16g01913 . 5 221 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 35.945 4.41e-32 124.0
Dapi25g00406 DST 7 136 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 35.878 4.32e-10 59.7
Dapi25g00453 . 7 208 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.81 7.64e-28 112.0
Dapi6g00892 . 7 239 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 30.962 4.35e-26 107.0
Dapi6g00805 . 461 585 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT1G62970 38.281 1.20e-06 47.8
Dapi18g03155 . 7 199 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 36.792 5.17e-33 127.0
Dapi7g00724 DST,WGDA 17 165 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT5G64360 53.548 2.10e-43 161.0
Dapi7g00725 DST,WGDA 193 421 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT5G64360 36.131 8.00e-41 151.0
Dapi12g02256 DST,WGDA 91 140 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 40.0 8.89e-06 44.3
Dapi28g01295 . 7 202 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 30.0 3.48e-23 99.0
Dapi1g00963 . 5 206 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 35.149 2.95e-31 122.0
Dapi1g00802 . 7 202 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 31.278 4.59e-23 98.6
Dapi1g00286 WGDA 91 140 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 40.0 8.81e-06 44.3
Dapi9g00441 . 7 208 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.81 7.64e-28 112.0
Dapi9g00390 DST 7 136 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 35.878 4.32e-10 59.7
Dapi24g00719 . 17 234 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT5G64360 31.646 5.46e-22 97.4
Dapi24g00059 . 7 208 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.036 1.22e-31 123.0
Dapi6g00140 ACH 66 136 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 40.845 1.19e-09 57.0
Dapi22g00140 ACH 66 136 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 40.845 1.10e-09 57.0
Dapi16g00806 . 3 202 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 31.5 4.07e-27 110.0
Dapi16g00768 DST 35 136 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.654 1.47e-12 63.9
Dapi8g00899 . 7 136 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 39.231 6.22e-22 95.1
Dapi28g01326 . 7 202 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 30.0 3.48e-23 99.0
Dapi14g01590 . 7 210 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 30.342 6.91e-26 107.0
Dapi22g00525 . 7 239 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 30.962 4.58e-26 107.0
Dapi30g01570 . 7 210 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 30.342 7.18e-26 107.0
Dapi2g02717 . 7 207 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 31.95 1.30e-28 114.0
Dapi23g00775 . 79 153 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT5G64360 40.26 6.27e-09 56.2
Dapi23g00739 DST,WGDA 17 162 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT5G64360 50.0 2.54e-40 150.0
Dapi23g00738 DST,WGDA 17 165 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT5G64360 53.548 2.16e-43 161.0
Dapi17g01900 DST 9 147 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 51.748 6.42e-40 142.0
Dapi17g01204 . 5 221 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 34.101 2.50e-31 122.0
Dapi17g00832 . 7 202 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 30.837 4.46e-22 95.5
Dapi17g00266 WGDA 91 140 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 40.0 9.06e-06 44.3
Dapi29g01332 . 7 141 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 37.778 1.11e-24 97.4
Dapi29g01194 . 23 234 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT5G64360 28.099 3.72e-22 98.6
Dapi29g01152 . 7 311 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 46.705 4.13e-99 293.0
Dapi15g00571 DST 14 226 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 41.204 4.44e-47 159.0