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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi2g03728 ATGGCTCATATGGAATCAATCAGAGGGGAGGTGAGAATTCATGAAAGTTTGGATGAACTCAGCACGGATTTGGCTGATTATATAGCAGAGTTATCCGAGGCATCGGTTAAAGAACGAGGCTTTTTCGCCATTGCTTTGTCTGGTGGCTCAATTATTAGCTTGATGAGGAATCTGTGTGGAGCTCCTTATAACAAGACTGTTGATTGGTCAAAATGGTATATATTTTGGGCAGATGAACGAGTGGTTGCCAAGAATCATGTTGATAGCAACTATAAGCTTGCTAAAGATCATCTTTTGTCTAAGTTGCCTATTGTTCCAAGCCATGTGCATTCCATCAATGATTCTCTGACTGCAGAAGAAGCTGCAAACGAATACGAGTTTGTGATCAGGCAACTGGTCAGGACCCGTGTGGTGAACGTGTCTGAGGTCAGCGACTGCCCGAAGTTTGACTTAATCCTTCTAGGGATGGGCCCGGATGGGCACGTGGCGTCTTTATTTCCCAATCATTCGGTTCTTGAAGAAAAGAATGAATGGGTGACATTTATCACCACTTCCCCTAAGCCCCCGCCCGAAAGAATCACCTTCACACTGCCTGTTATCAACTCGGCTGCCAATGTGGCGGTGGTGGTGACAGGTGGCGGGAAAGCGGAAGCTTCGCGGCTGGTGATAGATGATGTGGGACCCGAGTGTCCGGTGTTGCCAGCTAGGATGATTGAGCCAGTTGTAGGGAAACTGGTGTGGTTTTTGGATAATCAGGCTGCTTCAAAGCTAAAGGGCTTTTCTAAATTTTGTAAGTAG 798 46.49 MAHMESIRGEVRIHESLDELSTDLADYIAELSEASVKERGFFAIALSGGSIISLMRNLCGAPYNKTVDWSKWYIFWADERVVAKNHVDSNYKLAKDHLLSKLPIVPSHVHSINDSLTAEEAANEYEFVIRQLVRTRVVNVSEVSDCPKFDLILLGMGPDGHVASLFPNHSVLEEKNEWVTFITTSPKPPPERITFTLPVINSAANVAVVVTGGGKAEASRLVIDDVGPECPVLPARMIEPVVGKLVWFLDNQAASKLKGFSKFCK 265
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi2g03728 265 Pfam Glucosamine-6-phosphate isomerases-6-phosphogluconolactonase 17 247 IPR006148 GO:0005975(InterPro)
Dapi2g03728 265 CDD 6PGL 18 249 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Dapi2g03728 265 SUPERFAMILY NagB-RpiA-CoA transferase-like 11 258 IPR037171 -
Dapi2g03728 265 NCBIfam 6-phosphogluconolactonase 13 257 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Dapi2g03728 265 PANTHER 6-PHOSPHOGLUCONOLACTONASE 7 258 IPR039104 -
Dapi2g03728 265 FunFam Probable 6-phosphogluconolactonase 6 258 - -
Dapi2g03728 265 Gene3D - 6 260 - -
Dapi2g03728 265 Coils Coil 17 37 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi2g03728 K01057 6-phosphogluconolactonase [EC:3.1.1.31]
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Event-related genes

Select Gene_1 Gene_2 Event_name
78500 Dapi21g00164 Dapi2g03728
81479 Dapi2g03728 Dapi5g00120
257384 Dapi18g02903 Dapi2g03728
257677 Dapi18g03025 Dapi2g03728
387758 Dapi24g00165 Dapi2g03728
389704 Dapi2g03728 Dapi8g00213
389705 Dapi2g03728 Dapi8g00302
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2012568 Dapi Dapi18g02903 Dapi-Chr18:131247404 Dapi2g03728 Dapi-Chr2:141306067
2012987 Dapi Dapi18g03025 Dapi-Chr18:133521660 Dapi2g03728 Dapi-Chr2:141306067
2021329 Dapi Dapi2g03728 Dapi-Chr2:141306067 Dapi21g00164 Dapi-Chr21:3441262
2022026 Dapi Dapi2g03728 Dapi-Chr2:141306067 Dapi24g00165 Dapi-Chr24:2299955
2023185 Dapi Dapi2g03728 Dapi-Chr2:141306067 Dapi5g00120 Dapi-Chr5:2722713
2023775 Dapi Dapi2g03728 Dapi-Chr2:141306067 Dapi8g00213 Dapi-Chr8:3671496
2023915 Dapi Dapi2g03728 Dapi-Chr2:141306067 Dapi8g00302 Dapi-Chr8:5413081