AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi31g01431 ATGGCTGACAACGATAATCTCAAAGATCCTACTAATGATGCCGCCATTCCTGCTCCCAAATCACCGTGGAAGACACCGGCCCCGTCGTTAACTCCACCGCCGGTGGTAGCTCCGCCGGTTGATTTTTGGCCGGCGCTCTCTTCGTTAAAATCCCCTTCTGCCGCCGCCGCTGCGGATTCAGTTACTACCACCAGTGCTACGTCTTCTCCTAAACAAAATCAGGCATCCACCGAGGCGACAAAGACACACGGGCGTGGAAACCATAATTCTTTCTCTAGGCAACCGTCGCGCCAACATAAAGCTGTCAATAAGCATAACCCGAACACTGCAGCATCTTTTCACGGACCATTACCCTTCCATCAGCCACCAATTCCGCCTGTTTATGGCGGCATGGCACCCTGGCCCGCTCATATTCCTGTTCATGGATATGCTTACCCGCCAGCTGTTGGATCATTTTCTCCAGCAAGTGGTACCATTACAGTTCCGCCAAGAGGCAATCCTAATAATTATGGTGTCGAGTTTCCTAACAGAAGACCTAACATGCAAGAAAATCAGAAACCGTTAGGTCCAAAAGAGAGTAATGATGTGCATCAAAATGCCAGGCCAAGACCCTTTATTAGGCCCCCCTTTTTTGGCCCGCCTGCAGGATTTATTGGTGGTCCTGTCTTTCCTGGTCCTCCGGGTTCTATTGTCTATCTTCCTGCTATGCCTCCGTACTCTGTTAGGGTCCCACATCCACCATTTGTTGTTCCACACCAGCCAGGTCCCACAGTTCCTATGTTACCTGCACAGGCACAAGCCCTGAGAGTTAGCGTTCGAAACCAAATCGAATATTATTTCAGCGACCAGAATCTGCAAAGTGATCGGTATTTGATTTCTTTGATGGATGACCATGGATGGGTTCCAATATCCACTATTGCTGACTTCAAAAGGGTTAAAAGTATGAGTACGGATATACCACTTATTGTGGACGCCTTACAGAGTTCTAGTACTCTCGAAGTGCAGGGTGAGAAAGTGAGAAAGTGTGAAGATTGGTCAAAGTGGATTCCAGCTTCTGTCGGGGATAAATCTTCTTCTATTGAAGAGCGCCCAACAAAACAATCTGAATCTGAAAAGAATAATAAGTTTGATTCTTTAAAGAATGATGCTTCTGGTGAAAATCTGGATAAAGTTTGTGATGATTTTGCAAGCACATTCATGTTTGATGAGGAGCTGGAGCTTGAACAGAAGGATCAGTTTTCTTCTAAAACAAGGGTGGATGACGAAGATGATGAAATGGTTGTTAATGATCAAGCAGTTGAGAGGCTTGTAATTGTTACCCAACAAAATAACAGGAACGGACAAGGAACTAAATGTTCCGTGGAGGAAACAAAATCATTTTCTAACGAGCTTGCTTCTGCCATAAATGATGGTCTTTACTACTATGAACAGGAGTTAAAATCAAAGCGAAATAAAGGTAGAACTAATTCAGCAAATGAAATAAAAGGCGGAACCTCCAAATCTCCTAAAGTTGGTTCTTACATAGCAAATCAGAAGGCAATAGGTGGTGGTGGTGACGTGGCCGGCAGTCCTAATTCTAGAAGGAAGCAAAATAAAAGTTTTTTTAAGCAACAATCACTGAAGAACCAGCGGTGGTTTTCTGGCAGCCTCAAGAATAATGGAAGTGATCATATCATATCAGAAAGCCCACCAAGTACTTCAGTCGGGTTTTTCTTTGGGTCAACACCCCCTGATAGTCACGGATTAAGGTCTTCAAAACTTGGTGTTTCTCCTCATGGCGGCTATACTAGCGGAAGTCCACCTGTCGGCTCCATGCCAAAGCCATTTCCGCCTTTCCAGCACCCTAGTCATCAGCTTCTAGAAGAAAATGGTTTTAGGCAGCAAAAGTATGTAAAATATCACAAGAGATGCCTAAATGAGCGCAAGAAATGTGGCATTGGATGCAGCGAGGAAATGAATACTCTGTACAGATTCTGGTCATATTTTCTTCGAGACCTGTTTGTTCCGTCAATGTATAATGAATTCAAGAAAATCGCACTGGAAGACTCAGCTCTTGGTTACAATTATGGATTAGAGTGCCTTTTCAGATTTTACAGCTATGGTTTGGAGAAAGAATTCAGGGAAGATGTATATGCCGATTTTGAACAGCTGACTCTGGATTTCTACCATAAGGGAAATCTTTACGGTCTTGAGAAATACTGGGCATTCCATCACTATTCTCATTCAAAGGACCATAAAAAGCTCCCAGAACTGGAAAGGCTACTGAAAGAAGACTTCAGGAGCTTGAATGACTTTAAGGTCAACCGTGCCAAAACAAAAGCCAAAAATGAGAGCAAGTAA 2340 43.89 MADNDNLKDPTNDAAIPAPKSPWKTPAPSLTPPPVVAPPVDFWPALSSLKSPSAAAAADSVTTTSATSSPKQNQASTEATKTHGRGNHNSFSRQPSRQHKAVNKHNPNTAASFHGPLPFHQPPIPPVYGGMAPWPAHIPVHGYAYPPAVGSFSPASGTITVPPRGNPNNYGVEFPNRRPNMQENQKPLGPKESNDVHQNARPRPFIRPPFFGPPAGFIGGPVFPGPPGSIVYLPAMPPYSVRVPHPPFVVPHQPGPTVPMLPAQAQALRVSVRNQIEYYFSDQNLQSDRYLISLMDDHGWVPISTIADFKRVKSMSTDIPLIVDALQSSSTLEVQGEKVRKCEDWSKWIPASVGDKSSSIEERPTKQSESEKNNKFDSLKNDASGENLDKVCDDFASTFMFDEELELEQKDQFSSKTRVDDEDDEMVVNDQAVERLVIVTQQNNRNGQGTKCSVEETKSFSNELASAINDGLYYYEQELKSKRNKGRTNSANEIKGGTSKSPKVGSYIANQKAIGGGGDVAGSPNSRRKQNKSFFKQQSLKNQRWFSGSLKNNGSDHIISESPPSTSVGFFFGSTPPDSHGLRSSKLGVSPHGGYTSGSPPVGSMPKPFPPFQHPSHQLLEENGFRQQKYVKYHKRCLNERKKCGIGCSEEMNTLYRFWSYFLRDLFVPSMYNEFKKIALEDSALGYNYGLECLFRFYSYGLEKEFREDVYADFEQLTLDFYHKGNLYGLEKYWAFHHYSHSKDHKKLPELERLLKEDFRSLNDFKVNRAKTKAKNESK 779
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi31g01431 779 SUPERFAMILY Winged helix DNA-binding domain 260 350 IPR036390 -
Dapi31g01431 779 MobiDBLite consensus disorder prediction 490 506 - -
Dapi31g01431 779 MobiDBLite consensus disorder prediction 53 110 - -
Dapi31g01431 779 Gene3D - 261 350 IPR036388 -
Dapi31g01431 779 SMART dm15 624 665 IPR006607 GO:0000339(InterPro)|GO:0048255(InterPro)
Dapi31g01431 779 SMART dm15 705 740 IPR006607 GO:0000339(InterPro)|GO:0048255(InterPro)
Dapi31g01431 779 SMART dm15 666 704 IPR006607 GO:0000339(InterPro)|GO:0048255(InterPro)
Dapi31g01431 779 SMART la 266 342 IPR006630 -
Dapi31g01431 779 CDD LAM 272 341 - -
Dapi31g01431 779 PANTHER LUPUS LA PROTEIN-RELATED 52 712 IPR045180 GO:0003723(PANTHER)
Dapi31g01431 779 MobiDBLite consensus disorder prediction 524 538 - -
Dapi31g01431 779 ProSiteProfiles La-type HTH domain profile. 262 351 IPR006630 -
Dapi31g01431 779 MobiDBLite consensus disorder prediction 483 538 - -
Dapi31g01431 779 MobiDBLite consensus disorder prediction 21 40 - -
Dapi31g01431 779 MobiDBLite consensus disorder prediction 1 118 - -
Dapi31g01431 779 MobiDBLite consensus disorder prediction 177 197 - -
Dapi31g01431 779 Pfam LARP1 HEAT repeat region 614 761 IPR006607 GO:0000339(InterPro)|GO:0048255(InterPro)
Dapi31g01431 779 MobiDBLite consensus disorder prediction 353 381 - -
Dapi31g01431 779 MobiDBLite consensus disorder prediction 359 381 - -
Dapi31g01431 779 Pfam La domain 272 327 IPR006630 -
Dapi31g01431 779 MobiDBLite consensus disorder prediction 177 192 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi31g01431 K18757 la-related protein 1
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Event-related genes

Select Gene_1 Gene_2 Event_name
246644 Dapi31g01431 Dapi15g00932
247984 Dapi15g00932 Dapi31g01431
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr31:57434516 Dapi3g02459 Dapi-Chr3:119458547 dispersed
Dapi Dapi-Chr15:45532274 Dapi31g01431 Dapi-Chr31:57434516 wgd
Dapi Dapi-Chr31:57434516 Dapi6g02080 Dapi-Chr6:65296890 wgd