AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi31g02013 ATGAGGACATTCTTCCCATCTGAATCTTGTAAAGAATCACATCTAAATGCTTTGAATCCACAATCATGGCTGCAAGTTGAAAGAGGAAAGCTTTCAAAAGTTTCACCTCACTCTCCTTCTTCATTAGAATCTCTAATCAAAGTCCCCGATCCATCGATTCTACCGCTTTTTAAACCTGTTGATTATGTAGAAGTGTTAGCCCAAATCCACAAAGAACTCGAATCATGCCCTCCACATGAGCTCCCAAACCTTTATTTATTACGGTTTCAAGTCTTTAAGGGCCTCGGTGACATTAAACTAATGAGAAGAAGCCTTAGGTTGGCTTGGCTCAAATCTAGTACGGTTCACGAACGGCTCGTCTTTGGGGCATGGTTAAAATATGAAAAACAAGGTGAAGAACTTATATCGAATTTACTCTCTTCATGTGGTAAATGTGCAAAAGAGTTTGGGTTGATAGACATCGGTTCTGAGCTTTCGTCTGTAGTAAACACCTGTTTTCCTGATGATGCAATGATGAACCAAAAGAGTTGTTTATCGGGAACGGTTTCGTTTCAAATCGGGGATGAAAAAATAGTGTGTGATAGACAAAAAATGGCGGCCCTTTCGCCCCCGTTTCGTTCTATGCTTAACGGGTGTTTTATAGAGTCGGTTTCAGAGGTCATAGATTTGTCAAAAAACGACATTTCACCAACGGGTATGAAGGTGATTAGTGAATTCAGCTCAACAGGGATTTTACCCGATTTACCAACGGATCTTTTACTAGAAATCATGGTGTTTTCAAGTAAATTTTGTTGTGAGAATCTTAAAGATTCTTGTGATAGGAAACTTGCAACACTCATTTTATCAAGAAACGACGCGGTTGAACTTATGGAATATGCTCTAGACGAGAATTGCCCGGTTCTTGCTGCCTCTTGTTTGCAGGTTTTCCTTCAAGAACTCCCGGATTCTCTTAATGATGAGCGCGTTGTTGACTTGTTGGTCAGTGTTAACAGTCTGCATAGATCGGTTATGGTGGGGTCCGCTTCGTTTTCACTCTGCTGTTTATTAAGCCAAGTTGCTATGGATCTTGATCCGGGGTCCGATAAAGCTGCTTGCTTTTTGGAACAATTAGTTGACTCTTCGGAAAATAGTCAACAAAAAATGGTGGCATGTCACATGTTAGGATGTGTGAAATTACTCAAGAAGGAATATAACGAGGCCGAAAGATTATTTGAGGCTGCATTGACCGAAGGGCATGTCTATTCTGTCACGGGTTTGACTAGAATTGGTCAACTTAAAGGCGAAAAGGTTGAGTCTTTCAAGAAACTGAGCTCGGTTATTTCAAATTACACACCTATGGGGTGGATGTATCAAGAACGGTCATTATACTGTGAAAATAATGAAAAAAGATGGGAAGATCTTGAAAAAGCAACCGACTTGGATCCGACTTTGACATACCCTTATATGTACCGCGCGGCTTCTTTAATGAAAAAGCAAAATGTGCAAGATTCAATGGCGGAAATTAACAAGATTCTTGGTTTCAAACTTACAGTTGAATGTTTGGAACTGAGGTTTTGTTTTCATTTAGTTCTTGAAGATTATCAATCGGCGATTCGGGATGTGCAGGCGATTCTTACTATTTGTCCTGAGTATCGAATGTTTGAGGGGCGGGTACCCGCAACACAGTTTCAAACTTTGGTTCGTGAGCATGTTGTAAATTGGACAACTGCAGATTGTTGGCTACAGTTGTATGATCGGTGGTCTGCTGTTGATGATATCGGGTCACTTTCTGTAATATATCAAATGCTGGAGTCTGAAACAGCTAAAGGGGTTTTGTATTTTAGACAGTCTTTGCTTCTACTCAGGTTAAATTGCCCGGAAGCAGCGATGCGGAGTTTACAATTGGCGCGCCAACATGCATCGAGTGAACATGAACGTTTAGTTTATGAGGGTTGGATATTATATGACACGGGCCATTGTAATGAAGGGTTGAAAAAAGCCGAAGAGTCTATTAAGTTGAATAGATCTTTTGAAGCCTTTTTCCTAAAAGCATATGCTTTGGCGGATTCTAGCCAAGATCCTACCTGTTCTTCAACCGTTGTAGCACTTCTTCAAGATGCCCTTAAATGCCCTTCCGATAGGCTTCGTAAAGGCCAGGCATTGAACAATCTTGGAAGCGTTTATGTAGATTCTGGGAAACTAGACCTTGCAGCCGATTGCTACATTAACGCGCTTAAAATAAGGCACACGCGGGCCCACCAAGGACTTGCTCGCGTCCAATATTTAAAAAATAACAAGTCTGCAGCTTATGATGAAATGACAAAGTTAATCGAGAAGGCACGGAATAATGCATCTGCATATGAAAAGAGATCAGAGTATTGTGAACGTGAACAGACGAAGATAGATCTTGAAATGGTTACTCGTTTGGATCCTCTTAGGGTTTATCCTTACAGATATCGCGCAGCAGTCTTGATGGACAACCACAAGGAGAAAGAAGCGATATCGGAGCTATCAAGGGCGATTGCATTCAAAGCAGATCTACATTTATTGCATTTACGGGCAGCGTTTCATGAACATATTGGGGATGTTTTGGGTGCCATGCGGGATTGTCGAGCCGCCCTATCTTTTGACCCGAACCATCAAGAAATGCTTCAACTTCGGAGTTGTGTAAACAGCCAAGAACCCTAA 2667 41.36 MRTFFPSESCKESHLNALNPQSWLQVERGKLSKVSPHSPSSLESLIKVPDPSILPLFKPVDYVEVLAQIHKELESCPPHELPNLYLLRFQVFKGLGDIKLMRRSLRLAWLKSSTVHERLVFGAWLKYEKQGEELISNLLSSCGKCAKEFGLIDIGSELSSVVNTCFPDDAMMNQKSCLSGTVSFQIGDEKIVCDRQKMAALSPPFRSMLNGCFIESVSEVIDLSKNDISPTGMKVISEFSSTGILPDLPTDLLLEIMVFSSKFCCENLKDSCDRKLATLILSRNDAVELMEYALDENCPVLAASCLQVFLQELPDSLNDERVVDLLVSVNSLHRSVMVGSASFSLCCLLSQVAMDLDPGSDKAACFLEQLVDSSENSQQKMVACHMLGCVKLLKKEYNEAERLFEAALTEGHVYSVTGLTRIGQLKGEKVESFKKLSSVISNYTPMGWMYQERSLYCENNEKRWEDLEKATDLDPTLTYPYMYRAASLMKKQNVQDSMAEINKILGFKLTVECLELRFCFHLVLEDYQSAIRDVQAILTICPEYRMFEGRVPATQFQTLVREHVVNWTTADCWLQLYDRWSAVDDIGSLSVIYQMLESETAKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHASSEHERLVYEGWILYDTGHCNEGLKKAEESIKLNRSFEAFFLKAYALADSSQDPTCSSTVVALLQDALKCPSDRLRKGQALNNLGSVYVDSGKLDLAADCYINALKIRHTRAHQGLARVQYLKNNKSAAYDEMTKLIEKARNNASAYEKRSEYCEREQTKIDLEMVTRLDPLRVYPYRYRAAVLMDNHKEKEAISELSRAIAFKADLHLLHLRAAFHEHIGDVLGAMRDCRAALSFDPNHQEMLQLRSCVNSQEP 888
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi31g02013 888 Coils Coil 756 790 - -
Dapi31g02013 888 PANTHER ETO1-RELATED 1 887 IPR044631 GO:0010105(InterPro)
Dapi31g02013 888 Gene3D Tetratricopeptide repeat domain 353 548 IPR011990 GO:0005515(InterPro)
Dapi31g02013 888 SUPERFAMILY TPR-like 465 670 IPR011990 GO:0005515(InterPro)
Dapi31g02013 888 SMART tpr-5 840 873 IPR019734 GO:0005515(InterPro)
Dapi31g02013 888 SMART tpr-5 637 670 IPR019734 GO:0005515(InterPro)
Dapi31g02013 888 SMART tpr-5 711 744 IPR019734 GO:0005515(InterPro)
Dapi31g02013 888 SMART tpr-5 603 636 IPR019734 GO:0005515(InterPro)
Dapi31g02013 888 SMART tpr-5 381 414 IPR019734 GO:0005515(InterPro)
Dapi31g02013 888 SMART tpr-5 511 544 IPR019734 GO:0005515(InterPro)
Dapi31g02013 888 SMART BTB-4 180 280 IPR000210 GO:0005515(InterPro)
Dapi31g02013 888 SUPERFAMILY POZ domain 182 276 IPR011333 -
Dapi31g02013 888 Coils Coil 390 410 - -
Dapi31g02013 888 SUPERFAMILY TPR-like 367 505 IPR011990 GO:0005515(InterPro)
Dapi31g02013 888 SUPERFAMILY TPR-like 695 884 IPR011990 GO:0005515(InterPro)
Dapi31g02013 888 ProSiteProfiles TPR repeat profile. 711 744 IPR019734 GO:0005515(InterPro)
Dapi31g02013 888 Pfam Tetratricopeptide repeat 712 740 IPR019734 GO:0005515(InterPro)
Dapi31g02013 888 Gene3D Tetratricopeptide repeat domain 791 887 IPR011990 GO:0005515(InterPro)
Dapi31g02013 888 Gene3D Tetratricopeptide repeat domain 599 790 IPR011990 GO:0005515(InterPro)
Dapi31g02013 888 Gene3D Potassium Channel Kv1.1; Chain A 174 319 IPR011333 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi31g02013 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
390158 Dapi31g02013 Dapi4g01981
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr31:99227729 Dapi4g02254 Dapi-Chr4:128782889 dispersed
Dapi Dapi-Chr31:99227729 Dapi4g01981 Dapi-Chr4:119922316 wgd