AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi31g02029 ATGAATTCGATTAAGCTATGGCCTCCTAGCCACAGCACGAGGCAAATACTCATGGACCGGATTGTAAAAAACCTCACAACCCCATCCATTTTGACAAGAAAATACGGGCTTTTAAGCAAAGAAGAAGCAGAGGAAGATGCTAAACACATCGAATCTGCAGCATTTGCAGCTGCGACACAACAATTTGAAAAGGAGCCCGAAAGTGATGGAGGATCCGCGGTCCAAATTTATGCTAAAGAATCTAGTAAACTAATGGTAGAGTTTGTCAAAACTGGTCCCAAACATAAAGAAGACCGAGAGACCATACCAGACTTGACCACATTAGACCATGAACACGTTTTTGATATTTCTGGAGGGCGTCAGGCCTTCATTGATGCAGAAGAGGCTAAAGAGCTGCTAAAACCATTAAAGGAGCCTGGAAACAAGTTCACAAAAATCCGTTTTAGTAATAGGAGTTTCGGGTTATCTGCAGCTCATGTGGCTGCGTCGATATTGTCATCTATCAAAGATCAGTTAACTGAAGTTGACTTGTCGGATATTGTTTCTAGGAGGCCCGAGCCTGAAGCTGTTGAGGTTATGAAAATGTTTTCATCAGCACTTGAGGGTTGTCAGTTGAATTATCTGAATTTATCTAATAATGCTTTGGGTGAAAAGGGGGTAAGGGCCTTTGGGGGTCTTTTGAAGTCCCAAGGTAATCTTGTTGAGTTGTTTTTTATGAATGCTGGGATCTCACAAGAAGCTGCAAAGGCGGTTTCCGAGTTGATTCCTTCGACCAGTAAACTTAAGATTCTTCATTTTCATCATAACATGACGGGAGATGAAGGTGCAGTTGCTATTTCTCAACTTATTAAAGGATCTCCCAATCTAGAGGATTTCAGGTGTTCCTCCTCAAGGGTTGGGTCAGTAGGGGGTGTTGCACTAGCTGAAGCACTTAAGACATGCACCCTTTTGAAGAAACTCGACTTACGCGACAACATGTTTGGACCAAAACCGGGGGTTGCATTGAGTCAAGCCCCTTATGCAAACCTTACCGAAATCTACCTCAGTTACTTGAATTTGGAAAATGAAGGGACTATAGCCCTCGCAAATGCTCTAAAACAACCCGATTCCGCCCTTGAAATAATGGAAATGGCCGGAAACAACATCACTACAGAAGCGGCAGCTAATGCTTTGGCTGCTTGCATGATCTCAAACAAACACTCTTTGACCCGAATAAACTTATCTGAAAATGAAATCAAAGACGCGGGAGCTATGGTGATCGCAAAGGCACTTGAAGATGCGTTTGGACGATTATGTGTGGTTGATTTTAGCACCAATGGGATTGAGACAGGTGGCGCCGTGGCATTGGCTAAAGCGGTTGTGGCTAAACCGGGGTTTAGACTGTTAAATATTAATGGTAACTTCTTATCTCACGATGGTGTTGAGGTTGTTAGAGATATTTTTAAGGATTTCCCTCGTATGCTGGGACCGCTCGATCAGAATGACACTCGTCGTCACGAATTTGATGAGCTCGAGTCGAAGCTCAAGGACCTTGAAATGAAGCAGAAACAATAA 1554 43.24 MNSIKLWPPSHSTRQILMDRIVKNLTTPSILTRKYGLLSKEEAEEDAKHIESAAFAAATQQFEKEPESDGGSAVQIYAKESSKLMVEFVKTGPKHKEDRETIPDLTTLDHEHVFDISGGRQAFIDAEEAKELLKPLKEPGNKFTKIRFSNRSFGLSAAHVAASILSSIKDQLTEVDLSDIVSRRPEPEAVEVMKMFSSALEGCQLNYLNLSNNALGEKGVRAFGGLLKSQGNLVELFFMNAGISQEAAKAVSELIPSTSKLKILHFHHNMTGDEGAVAISQLIKGSPNLEDFRCSSSRVGSVGGVALAEALKTCTLLKKLDLRDNMFGPKPGVALSQAPYANLTEIYLSYLNLENEGTIALANALKQPDSALEIMEMAGNNITTEAAANALAACMISNKHSLTRINLSENEIKDAGAMVIAKALEDAFGRLCVVDFSTNGIETGGAVALAKAVVAKPGFRLLNINGNFLSHDGVEVVRDIFKDFPRMLGPLDQNDTRRHEFDELESKLKDLEMKQKQ 517
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi31g02029 517 Gene3D Ribonuclease Inhibitor 101 516 IPR032675 -
Dapi31g02029 517 SUPERFAMILY RNI-like 110 500 - -
Dapi31g02029 517 Pfam WPP domain 3 98 IPR025265 -
Dapi31g02029 517 Pfam Leucine Rich repeat 399 421 IPR001611 GO:0005515(InterPro)
Dapi31g02029 517 Pfam Leucine Rich repeat 205 223 IPR001611 GO:0005515(InterPro)
Dapi31g02029 517 Gene3D WPP domain 3 100 IPR038214 -
Dapi31g02029 517 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 3 516 IPR045203 GO:0005096(InterPro)
Dapi31g02029 517 SMART LRR-RI-2 258 285 - -
Dapi31g02029 517 SMART LRR-RI-2 456 483 - -
Dapi31g02029 517 SMART LRR-RI-2 340 367 - -
Dapi31g02029 517 SMART LRR-RI-2 399 426 - -
Dapi31g02029 517 SMART LRR-RI-2 202 229 - -
Dapi31g02029 517 SMART LRR-RI-2 286 313 - -
Dapi31g02029 517 SMART LRR-RI-2 369 397 - -
Dapi31g02029 517 Coils Coil 494 514 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi31g02029 K14319 Ran GTPase-activating protein 1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr31:99965822 Dapi7g02518 Dapi-Chr7:110786890 wgd