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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi31g02100 ATGGCCACTCCCGATATTCTTCCTAACGGCGAACACGATCATTTCTTATACGATCATCATACCAAAGGCGATGCTAAATCACGAGGATTGGAAATCGAGAAGAAAATCGAATATCTCGAGAGCTTGAATGACAGAGTTAGCAACAGACGGGCGCGGAGATGGATAAATGATCGTATACTGTTGGAGCTTGTGCCTCGTTTGACTGGAGATGAAATTAGAGGGTTGTTTGCTCCACCACCTTGGGGTGATGAGCCACAGCCGTCACCATTTTGCATGACAAATGTGGGGGAGTGGGACAAATTTAGGAATATAGACATGGATAAAGAGGCTGGTGCAATAGAGGCCCTTAAAGGTTCTTCGTCAAAGAAGAAAAGTAGTGTGGATGCTGATAAGATAGCTGCGTTAACTGCATGGCACAGGGTTGACTGCAGAACTAGAGAGGCATTTCGCCGAAGCTTTCTTCCAGAACTTGTTAATGGTTTTGAGGTGAACATACGGGCCTTTGTCTCAGAGGCAGCTAATGAGGAGGTTCTTGTGATGTATGCTCAAGATCCTTTCCATAGGTTGTTACTTCATGGTGTTTGTGAGTTCTACAACTTGGTGTCAACAACGGAGTCAGAGATCAAAGGTACAAAGGTGTTGAAAATGACCAAAATCAAGAAGAAGAAAGCGGGCAACAACGAGCTCCCGACCATCACGCTTTGTGAGTTTCTGAAAATGGTGAAAGATGGTTTTTGGTAG 741 44.67 MATPDILPNGEHDHFLYDHHTKGDAKSRGLEIEKKIEYLESLNDRVSNRRARRWINDRILLELVPRLTGDEIRGLFAPPPWGDEPQPSPFCMTNVGEWDKFRNIDMDKEAGAIEALKGSSSKKKSSVDADKIAALTAWHRVDCRTREAFRRSFLPELVNGFEVNIRAFVSEAANEEVLVMYAQDPFHRLLLHGVCEFYNLVSTTESEIKGTKVLKMTKIKKKKAGNNELPTITLCEFLKMVKDGFW 246
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi31g02100 246 Pfam R3H-associated N-terminal domain 32 151 IPR025952 -
Dapi31g02100 246 PANTHER R3H DOMAIN-CONTAINING PROTEIN 4 23 244 IPR039629 -
Dapi31g02100 246 SUPERFAMILY R3H domain 138 234 IPR036867 GO:0003676(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi31g02100 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
249074 Dapi31g02100 Dapi4g01904
385485 Dapi20g01609 Dapi31g02100
385604 Dapi20g01852 Dapi31g02100
390185 Dapi31g02100 Dapi4g01683
390186 Dapi31g02100 Dapi4g01904
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr20:109321643 Dapi31g02100 Dapi-Chr31:103516142 wgd
Dapi Dapi-Chr31:103516142 Dapi4g01904 Dapi-Chr4:117491438 wgd