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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi4g01686 ATGGCGGAGGAGTTAGTGTTGGATACAGCGATCAGAGATTGGGTGCTAATTCCTTTATCAGTAGTGATGGTTCTCATCGGAATACTTCGCTACTTCGTCTCCAAGCTCATGCGTACTTCTCAATTACCGGATTCCAAAATCATCAAAGAAGGGCAGGTTATAATTAGGGCTAGAAATCTAAGGGCAGCTGCTAATTTCATACCTCCCAAAGCCTTTCGTGCGAGGAAATTATATTATACGAATGAGGAAAACGGTTTACTTCATGTTCCCAAGGGCCAGGCTCAGAATCCACAGGCACAAATGTTCTCTGATCCAAACATGGCTATGGATATGATGAAGAAGAATCTTTCTATGATCATACCACAGACCCTCACTTTTGCATGGGTTAACTTCTTCTTTTCCGGGTTTGTAGCAGCAAAGATACCTTTTCCACTGACTCAGAGGTTTAGATCCATGTTACAGAACGGGATTGATTTGAGTACTGTTGATGTCAGCTACGTTAGCAGTCGTTCTTGGTACTTTCTTAATCTGTTTGGATTGAGAGGCCTGTTTAGTCTCATTCTGGGAGAGGAAAATGCCACAGACGATACACAGCGCATGATGCAAATGAGTGGATTTGGCTTTGATCCATCAAAGAGTCTAGGTGCAGAAAAAGACGGTTTAGATATAGTTCAGCATGATTGGGTCCTACCAAAATTTGAGCAGCGTGCTGAAGCCGTGCTCAGAAAACGCCTTAGCAGCTAA 744 43.15 MAEELVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRTSQLPDSKIIKEGQVIIRARNLRAAANFIPPKAFRARKLYYTNEENGLLHVPKGQAQNPQAQMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSWYFLNLFGLRGLFSLILGEENATDDTQRMMQMSGFGFDPSKSLGAEKDGLDIVQHDWVLPKFEQRAEAVLRKRLSS 247
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi4g01686 247 SMART DUF106-2 4 192 IPR002809 GO:0016020(InterPro)
Dapi4g01686 247 Pfam Integral membrane protein EMC3-TMCO1-like 4 192 IPR002809 GO:0016020(InterPro)
Dapi4g01686 247 PANTHER UNCHARACTERIZED 1 244 IPR008568 GO:0016020(InterPro)|GO:0034975(PANTHER)|GO:0072546(PANTHER)
Dapi4g01686 247 PIRSF TMP-111 1 244 IPR008568 GO:0016020(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi4g01686 K23564 ER membrane protein complex subunit 3
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Event-related genes

Select Gene_1 Gene_2 Event_name
249086 Dapi31g02163 Dapi4g01686
260201 Dapi20g01620 Dapi4g01686
264804 Dapi4g01686 Dapi20g01620
385495 Dapi20g01620 Dapi4g01686
390201 Dapi31g02163 Dapi4g01686
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr20:95899171 Dapi4g01686 Dapi-Chr4:104309622 wgd
Dapi Dapi-Chr31:105861989 Dapi4g01686 Dapi-Chr4:104309622 wgd