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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi4g01874 ATGGTTGAAGGGACACGTGATTTGAAGGCGGAGGTTATTGTGTCATACGATATGGTTTTACGTGCGATGGCGTTTTGCTTTACTTTGGCTGCTGCGGTGGTTGCCGGCGTTGACCAGGAAACTCACAGGATTCCGATCACAATTTCCAAGAACTTTCTGCCGTTCAGCGTTTCCGTCACAGCTAAATGGCATTACCTTTCTTCAACTGTATTCTTGGTGGTGGCAAATAGCATAGCTTGTTCTTACTCGGTTGGATCAATAATACTTTCGATGAAAAGGAAGATCCGAACCCATCTGTCACTTCTCCTGTTTGACTTGATCATGATGGCGTTGCTGTTCTCCGCCAACGGAGCCGCCACGGCGGTGGGTATGATTGGCCTCAATGGCAATTCTCATGTCCAATGGCACAAGGTGTGTTATATTTTCAAGAGGTATTGCCATCAGGGTGCAGTCTCCATAACCATGTCCTTCCTTGGATCATTTGCGTTTCTATGGCTTGTGGTTTTTGCAATTCTAAATCTCCATAAAAAATCAGCTTGA 540 45.56 MVEGTRDLKAEVIVSYDMVLRAMAFCFTLAAAVVAGVDQETHRIPITISKNFLPFSVSVTAKWHYLSSTVFLVVANSIACSYSVGSIILSMKRKIRTHLSLLLFDLIMMALLFSANGAATAVGMIGLNGNSHVQWHKVCYIFKRYCHQGAVSITMSFLGSFAFLWLVVFAILNLHKKSA 179
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi4g01874 179 PANTHER CASP-LIKE PROTEIN 1U1 11 175 IPR044173 -
Dapi4g01874 179 Pfam Casparian strip membrane protein domain 16 161 IPR006702 -
Dapi4g01874 179 NCBIfam plant integral membrane protein TIGR01569 18 173 IPR006459 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi4g01874 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
260273 Dapi20g01827 Dapi4g01874
264876 Dapi4g01874 Dapi20g01827
385583 Dapi20g01827 Dapi4g01874
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr20:108372373 Dapi4g01874 Dapi-Chr4:116744938 wgd