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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi4g01876 ATGTCGTTCAAGAGTATAATTCAGGATATGAAGGGAGGAGACTTTGGGAGTATTTCTAGGAAAGGATTTGGTTTGAGGTCTAGGTCACAGAGAGTGGTGGAGGATAGATCTGTGGATATTGTTGATGGTTTGAAGCAGAGTTGTTGGGCGAATATGCCGCCGGAGTTGTTACGGGATGTGTTGATGAGGATTGAGGCGTCGGAGTGTGCGTGGCCGCCTCGGAAGAATGTGGTTTCGTGTGCCGGTGTTTGCCGGAATTGGAGAGAGATTATGAAAGATGTCGTGAAGCATCCTGAATTGTCTGGCAAATTGACTTTCCCTATATCGTTGAAGCAGCCTGGTCCAAGGAGTTCTCTAATACAGTGCTTTATAAAGCGGAACCGAAGCGCTCAAACATATCATCTTTACCTCACTTTAAATCAAGCATCAAACGATGACGGGAAGTTTCTTCTTGCTGCAAAAAAATGTAGACGTGCTACGTGCACTGATTATATAATTTCTTTGAATGCAGAAGATGTATCAAAAGGCAGCAGCACATACATAGGAAAGTTAAGATCAAACTTCCTTGGAACTAAATTCACTGTATATGACGCCCAACCGCCAAATGGAGGAGCTGTGACTACAAAATGCCGTTCCTTGAGGCCTGGAAGTATGAAACGAGTGTCGCCTAGGGTTCCTGCTGGAAACTACCCGGTTTCCAGTATTTCATATGAACTTAATGTCTTGGGGTCCAGGGGCCCAAGAAGGATGCAGTGTGTAATGAATGCAATTCCTGCAAGTGCTATGGACCCAGGGGGAGTGGCTCCAACTCAGACTGAGTTCCTTGTCAGCAATGCGGACTCATTTTCATCTATACCGTTTTTCAGATCAAAATCTGTACGTATCGATAATTCCCAATCTGGATCATTGTTGACCGGTCAAAACGACCCAATGCTGGTGTTGAAGAACAAGGCGCCTAGGTGGCATGAACAGCTGCAATGCTGGTGCCTGAATTTCAACGGGCGGGTGACTGTTGCTTCTGTGAAAAACTTTCAGTTAGTTGCTTCTATGGAGAATGGAGAACATGAAAATGTGATTATTCAGTTTGGAAAAGTTGGAAAAGATGCGTTCACCATGGATTATCAGTACCCGTTATCAGCTTTCCAGGCGTTTGCTATTTGCCTTAGCAGCTTCGACACCAAAATTGCCTGTGAATGA 1197 44.78 MSFKSIIQDMKGGDFGSISRKGFGLRSRSQRVVEDRSVDIVDGLKQSCWANMPPELLRDVLMRIEASECAWPPRKNVVSCAGVCRNWREIMKDVVKHPELSGKLTFPISLKQPGPRSSLIQCFIKRNRSAQTYHLYLTLNQASNDDGKFLLAAKKCRRATCTDYIISLNAEDVSKGSSTYIGKLRSNFLGTKFTVYDAQPPNGGAVTTKCRSLRPGSMKRVSPRVPAGNYPVSSISYELNVLGSRGPRRMQCVMNAIPASAMDPGGVAPTQTEFLVSNADSFSSIPFFRSKSVRIDNSQSGSLLTGQNDPMLVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASMENGEHENVIIQFGKVGKDAFTMDYQYPLSAFQAFAICLSSFDTKIACE 398
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi4g01876 398 CDD F-box-AtTLP-like 49 93 - -
Dapi4g01876 398 SUPERFAMILY Tubby C-terminal domain-like 98 398 IPR025659 -
Dapi4g01876 398 Gene3D Tubby Protein; Chain A 107 398 IPR025659 -
Dapi4g01876 398 Pfam Tub family 110 393 IPR000007 -
Dapi4g01876 398 PANTHER TUBBY-RELATED 45 397 - -
Dapi4g01876 398 ProSitePatterns Tub family signature 2. 383 398 IPR018066 -
Dapi4g01876 398 Gene3D - 43 98 - -
Dapi4g01876 398 FunFam Tubby-like F-box protein 106 398 - -
Dapi4g01876 398 Pfam F-box domain 49 95 IPR001810 GO:0005515(InterPro)
Dapi4g01876 398 PRINTS Tubby superfamily signature 164 180 IPR000007 -
Dapi4g01876 398 PRINTS Tubby superfamily signature 376 398 IPR000007 -
Dapi4g01876 398 PRINTS Tubby superfamily signature 355 374 IPR000007 -
Dapi4g01876 398 PRINTS Tubby superfamily signature 229 256 IPR000007 -
Dapi4g01876 398 PRINTS Tubby superfamily signature 332 348 IPR000007 -
Dapi4g01876 398 PRINTS Tubby superfamily signature 314 331 IPR000007 -
Dapi4g01876 398 PRINTS Tubby superfamily signature 180 204 IPR000007 -
Dapi4g01876 398 SUPERFAMILY F-box domain 44 98 IPR036047 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi4g01876 K19600 tubby and related proteins
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Event-related genes

Select Gene_1 Gene_2 Event_name
82270 Dapi4g01876 Dapi7g02551
260275 Dapi20g01829 Dapi4g01876
264878 Dapi4g01876 Dapi20g01829
385585 Dapi20g01829 Dapi4g01876
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr24:88114815 Dapi4g01876 Dapi-Chr4:116824257 dispersed
Dapi Dapi-Chr25:48013611 Dapi4g01876 Dapi-Chr4:116824257 dispersed
Dapi Dapi-Chr2:12605717 Dapi4g01876 Dapi-Chr4:116824257 dispersed
Dapi Dapi-Chr4:116824257 Dapi9g01272 Dapi-Chr9:50562694 dispersed
Dapi Dapi-Chr20:108456955 Dapi4g01876 Dapi-Chr4:116824257 wgd
Dapi Dapi-Chr32:64808775 Dapi4g01876 Dapi-Chr4:116824257 wgd
Dapi Dapi-Chr4:116824257 Dapi7g02551 Dapi-Chr7:111212590 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Dapi31g01009 ACH,DST 1 393 TUB Transcription Factor family AT2G18280 59.759 4.59e-175 492.0
Dapi11g01659 DST 33 413 TUB Transcription Factor family AT1G47270 55.527 2.70e-146 420.0
Dapi27g01659 DST 33 413 TUB Transcription Factor family AT1G47270 55.27 2.66e-145 417.0
Dapi7g02551 ACH 10 392 TUB Transcription Factor family AT2G47900 58.656 6.77e-156 442.0
Dapi18g00867 DST 1 379 TUB Transcription Factor family AT1G53320 63.683 1.16e-175 492.0
Dapi2g00650 DST 1 379 TUB Transcription Factor family AT1G53320 63.427 1.28e-175 492.0
Dapi25g01185 DST 55 269 TUB Transcription Factor family AT2G47900 70.233 1.42e-112 327.0
Dapi1g01471 DST 1 445 TUB Transcription Factor family AT1G25280 67.105 0.0 561.0
Dapi1g02465 DST 1 445 TUB Transcription Factor family AT1G25280 73.392 0.0 613.0
Dapi24g02090 . 254 378 TUB Transcription Factor family AT2G47900 57.937 1.39e-38 132.0
Dapi6g01063 DST 31 397 TUB Transcription Factor family AT1G16070 55.041 4.11e-145 415.0
Dapi6g00734 ACH,DST 1 445 TUB Transcription Factor family AT1G25280 74.066 0.0 623.0
Dapi7g00809 DST,WGDA 100 445 TUB Transcription Factor family AT1G25280 74.286 2.29e-169 477.0
Dapi26g01573 ACH,DST 13 340 TUB Transcription Factor family AT2G18280 58.056 3.38e-138 397.0
Dapi17g03126 DST 1 445 TUB Transcription Factor family AT1G25280 72.949 0.0 610.0
Dapi9g01272 DST 55 406 TUB Transcription Factor family AT2G47900 67.308 2.38e-179 501.0
Dapi16g01648 WGDA 1 445 TUB Transcription Factor family AT1G25280 71.957 0.0 614.0
Dapi20g01829 ACH,DST,WGDA 1 406 TUB Transcription Factor family AT2G47900 76.716 0.0 610.0
Dapi4g01876 ACH,DST,WGDA 1 406 TUB Transcription Factor family AT2G47900 76.471 0.0 608.0
Dapi10g01571 ACH,DST 1 393 TUB Transcription Factor family AT2G18280 59.529 4.61e-178 500.0
Dapi32g01941 . 1 445 TUB Transcription Factor family AT1G25280 71.957 0.0 617.0
Dapi22g01094 DST 31 397 TUB Transcription Factor family AT1G16070 54.496 1.05e-143 412.0
Dapi22g00679 DST 1 445 TUB Transcription Factor family AT1G25280 74.286 0.0 625.0
Dapi23g00821 DST,WGDA 100 445 TUB Transcription Factor family AT1G25280 74.286 2.29e-169 477.0
Dapi17g02007 DST 1 445 TUB Transcription Factor family AT1G25280 67.325 0.0 561.0
Dapi15g00441 DST 1 393 TUB Transcription Factor family AT2G18280 59.759 1.61e-174 491.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Dapi Tub 1.3e-110 CL0395 TF TUB