AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi4g01887 ATGGCGATCGCCGTCCCATCTTGCTGGTTTAATGCGCTCGCCGCCACCGGTACCTCTCGCTACACAGTCTCCTCCCAACGCCTATTCTCCTCGCCGCAAATTTCAGCTACTCGTTTAGTTATTCCTAAAGCTACGAGCAAGAGTCAAAATCCGAATAAGAGAAGTTCCAAGGAGCATACTCGTAAATCATCACCTCAGAAAGAAGCTAATATTCAAAAGCTTTCAAGAAGATCTAGAGATGAAAAACAGTATTCGAATGCTGATGATTACAGTGAGATGAAAAATGCAGAACAGCCTCAGTCAACCGCCTTTAAGTCGTTTGGTACACAGAGAAAAAACGCCAAAGGTTTTATGGGTACCTTGAAGGATCAACAGGGCGAGACTGCTAAAATTCAAGATGCTTCTTTTCTTAATGCTGTTGTAAAGGTTTACTGTACTCATACCGCACCCGATTATTCTCTCCCTTGGCAAAAGCAAAGACAATATACAAGTACAGGAAGTGCTTTCATGATTGGTGATGGAAAGCTTTTGACAAATGCTCATTGTGTTGAACATAACACACAAGTCAAAGTCAAGAGAAGGGGAGATGATACCAAGTATGTGGCTAAGGTTTTAGCTAAAGGCATGGAATGTGACATAGCTTTGCTTTCCGTGGAAAATGAGAAATTCTGGAAAGGAGCCGAGCCACTTCAGTTCGGCCATTTGCCTCGTCTTCAGGATCCAGTTACTGTTGTTGGGTATCCACTTGGGGGAGACACCATATCAGTGACCAAAGGGGTTGTATCTCGAATAGAGGTTACCTCCTATGCTCATGGGTCAGCTGAACTGTTGGGCATTCAAATTGACGCAGCAATTAATCCTGGTAATAGTGGCGGTCCTGCTTTCAATGATCAGGGAGAATGCATTGGTGTGGCATTTCAGGTGTACCGGTCTGATGACGTTGAAAACATTGGGTATGTAATTCCAACAACGGTCGTGTCTCATTTCCTTGATGATTATGAGAGGAATGGGAAGTATACCGGTTTTCCTTCCCTTGGAATATTATTGCAAAAGTTAGAGAATCCAGCTTTACGTGCCTGCTTAAAAGTCCCATCTAATGAGGGTGTACTTGTCCGCCGTGTGGAACCCACTTCTGGTGCCAGTAATGTCTTGAAGGAGGGGGATGTAATTGTAAGCTTTGATGGTGTAGAAGTTGGGTCAGAAGGGACAGTCCCATTTAGATCAACTGAACGCATTGCCTTCCGCTACCTCATTAGTCAAAAATTCACAGGGGATATAGCAGAGCTTGGAATCATCAGATCAGGGGCTTTTATGAAAGTTCAGACTGCTATGAATCCGCGTGTTCATTTGGTGCCGTATCATATTGACGGGGGTCAACCATCATACTTGATAGTAGCTGGCTTAGTTTTTACTCCTCTGTCAGAGCCACTAATAGATGAGGAATGCGAAGACAGCATAGGGTTAAAATTATTGACAAAGGCACGGTACTCCATGGCAAGGTTCAAAGGAGAACAGATTGTGATCTTATCACAGGTATTGGCAAATGAAGTTAACATCGGGTACGAGGATATGAGCAATGAGCAGGTTCTGAAGTTCAACGGAACGCGAATAAAGAACATTCACCATCTTGCTCATCTTGTCGATTCATGCACGGACAAATACTTGGTTTTTGAATTTGAAGACAATTATCTTGCTGTTTTAGAGAGAGAGGCTTCTTCAGCTGCCTCAACCTGCATCCTTAAAGATTATGGCATACCATCAGAGAGATCTTCTGATCTTCTAGAACCATACGTGGACCCCGTTGGTGAAAACCAAGTAATCGAACACCACGATCTTGGTGACAGTCCTGTCACAAATTCAGATTTCGGGTTTGATGGGCTTCAATGGGCTTGA 1893 43.69 MAIAVPSCWFNALAATGTSRYTVSSQRLFSSPQISATRLVIPKATSKSQNPNKRSSKEHTRKSSPQKEANIQKLSRRSRDEKQYSNADDYSEMKNAEQPQSTAFKSFGTQRKNAKGFMGTLKDQQGETAKIQDASFLNAVVKVYCTHTAPDYSLPWQKQRQYTSTGSAFMIGDGKLLTNAHCVEHNTQVKVKRRGDDTKYVAKVLAKGMECDIALLSVENEKFWKGAEPLQFGHLPRLQDPVTVVGYPLGGDTISVTKGVVSRIEVTSYAHGSAELLGIQIDAAINPGNSGGPAFNDQGECIGVAFQVYRSDDVENIGYVIPTTVVSHFLDDYERNGKYTGFPSLGILLQKLENPALRACLKVPSNEGVLVRRVEPTSGASNVLKEGDVIVSFDGVEVGSEGTVPFRSTERIAFRYLISQKFTGDIAELGIIRSGAFMKVQTAMNPRVHLVPYHIDGGQPSYLIVAGLVFTPLSEPLIDEECEDSIGLKLLTKARYSMARFKGEQIVILSQVLANEVNIGYEDMSNEQVLKFNGTRIKNIHHLAHLVDSCTDKYLVFEFEDNYLAVLEREASSAASTCILKDYGIPSERSSDLLEPYVDPVGENQVIEHHDLGDSPVTNSDFGFDGLQWA 630
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi4g01887 630 PRINTS HtrA-DegQ protease family signature 174 186 IPR001940 GO:0004252(InterPro)|GO:0006508(InterPro)
Dapi4g01887 630 PRINTS HtrA-DegQ protease family signature 275 292 IPR001940 GO:0004252(InterPro)|GO:0006508(InterPro)
Dapi4g01887 630 PRINTS HtrA-DegQ protease family signature 383 395 IPR001940 GO:0004252(InterPro)|GO:0006508(InterPro)
Dapi4g01887 630 PRINTS HtrA-DegQ protease family signature 196 216 IPR001940 GO:0004252(InterPro)|GO:0006508(InterPro)
Dapi4g01887 630 MobiDBLite consensus disorder prediction 41 105 - -
Dapi4g01887 630 Pfam Trypsin-like peptidase domain 166 304 - -
Dapi4g01887 630 Gene3D - 449 599 IPR046449 -
Dapi4g01887 630 MobiDBLite consensus disorder prediction 89 105 - -
Dapi4g01887 630 Gene3D - 346 448 IPR036034 GO:0005515(InterPro)
Dapi4g01887 630 ProSiteProfiles PDZ domain profile. 330 398 IPR001478 GO:0005515(InterPro)
Dapi4g01887 630 Pfam PDZ domain 451 592 IPR041517 -
Dapi4g01887 630 SUPERFAMILY Trypsin-like serine proteases 136 338 IPR009003 -
Dapi4g01887 630 CDD PDZ-serine-protease 343 441 - -
Dapi4g01887 630 Gene3D - 235 345 IPR043504 -
Dapi4g01887 630 FunFam Protease Do-like 9 121 223 - -
Dapi4g01887 630 FunFam protease Do-like 9 225 335 - -
Dapi4g01887 630 Gene3D - 120 224 IPR043504 -
Dapi4g01887 630 SUPERFAMILY PDZ domain-like 366 446 IPR036034 GO:0005515(InterPro)
Dapi4g01887 630 PANTHER - 43 597 - GO:0004252(PANTHER)
Dapi4g01887 630 MobiDBLite consensus disorder prediction 52 88 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi4g01887 K25896 protease Do-like 2, chloroplastic [EC:3.4.21.-]
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Event-related genes

Select Gene_1 Gene_2 Event_name
260278 Dapi20g01834 Dapi4g01887
264881 Dapi4g01887 Dapi20g01834
385589 Dapi20g01834 Dapi4g01887
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr4:116927515 Dapi9g00522 Dapi-Chr9:10877292 dispersed
Dapi Dapi-Chr20:108538812 Dapi4g01887 Dapi-Chr4:116927515 wgd