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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi4g01902 ATGAAGGTCGAACTTTGTGGTCATGCAACTTTAGCAGCTTCACACTTTGTTTTCCGGTCTGGATTGGTGAATTCTAACATAATTGAATTCTCAACCTTATCTGGAATTTTGACTGCCAAAAGAGTTCCAGCTAACACAAATGGTGAATTAGAAGACAACATCTACATAGAATTGGATTTCCCTGTTGTGCCAATTTCAAATTTCAAGGATGTTGAAGTTTCTACAATTTCAGAAATATTAAATGGTGTTTCTGTTGTTGGTGCTCTAAAGAATAATGCATTTGATGACATCATTGTGGTGCTTCCATCAGGAGAAGAAGTTGCAGATTTCAAGCCACAGTTTGATAAGATCAAAGAAGCTCCAGGCAGAGGGATAATCATCACAGCACCTGCACCAAATGGGTCAGGGTTTGACTTCTATTCTCGCTTTTTCTGCCCTAAATATGGAGTTAATGAGGATCCTGTTTGCGGGAGCGCGCATTGCGCCTTAGTAACATATTGGCATGAGAGGTCCGGGAAATGTGATTTTGTTGCATATCAGGCATCACGTAGAAGTGGCGTATTACATATCCATCTCGATAAGGAGAATCAAAGAGTGGTTCTTCGAGGTAAAGCCACCACAGTCATGGAAGGATCTCTTTTGGTCTAA 648 40.59 MKVELCGHATLAASHFVFRSGLVNSNIIEFSTLSGILTAKRVPANTNGELEDNIYIELDFPVVPISNFKDVEVSTISEILNGVSVVGALKNNAFDDIIVVLPSGEEVADFKPQFDKIKEAPGRGIIITAPAPNGSGFDFYSRFFCPKYGVNEDPVCGSAHCALVTYWHERSGKCDFVAYQASRRSGVLHIHLDKENQRVVLRGKATTVMEGSLLV 215
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi4g01902 215 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 72 203 - -
Dapi4g01902 215 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 1 71 - -
Dapi4g01902 215 SUPERFAMILY Diaminopimelate epimerase-like 3 214 - -
Dapi4g01902 215 PANTHER PHENAZINE BIOSYNTHESIS PROTEIN 3 215 IPR003719 GO:0003824(InterPro)|GO:0005737(PANTHER)|GO:0009058(InterPro)|GO:0016853(PANTHER)
Dapi4g01902 215 Pfam Phenazine biosynthesis-like protein 3 211 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi4g01902 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
260289 Dapi20g01850 Dapi4g01902
264892 Dapi4g01902 Dapi20g01850
385602 Dapi20g01850 Dapi4g01902
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr4:117394918 Dapi4g01902 Dapi-Chr4:117466134 tandem
Dapi Dapi-Chr4:117466134 Dapi4g01903 Dapi-Chr4:117482678 tandem