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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi4g01911 ATGGGCAGGCCATGTATAGAATCCTCGTCGTCATCTCCACCGCTGCTGACGACATCAACATCGATCACCGAAACTGTGAACGGGGAGCATGATTTCAGGATTTCCGGTTATTCGCTGTGTAAGGGTACTGGAATAGGGAAATATATAGCGTCTGATACGTTTACGGTTGGGGGGTATTCATGGGCGATATATTTTTACCCTGATGGGAAGAGTTTGGAGGATAACGCCAGTTATGTCTCCTTGTTTATTGCTTTGGCTAGTGATGGATCTGATGTCAGAGCGTTGTTTGAGTTGACTTTAATTGACCAAAGTGGGAAGGAGAGACATAAGGTTCATAGTCATTTTGGTAGAGCATTGGAGAGTGGACCTTATACTCTTAAATACAGGGGTAGTATGTGGGGATACAAGCGGTTTTTCAAAAGATCTACTTTGGAAACATCAGACTACCTTAAAGACGACTGCCTTCAAGTTCACTGCTGCGTTGGTGTGGTCAGGTCCCACACAGAGGGTCCTAAGTCCTACTCTATCCACGTGCCCCCTTCTGATATCGGGCAGCATTTCGGGCAGCTTCTGGAATGCGGAAAGGGGACTGATGTTTCTTTTGAAGTAAATGGGGAAACCTTTGCTGCCCATAAATTGGTTCTTGCCGCCCGCTCACCTGTTTTCAGGGCTCAACTTTTTGGGCCAATGAGAGATCAAAATGTGCATTGTATCAAAGTTGAAGACATAGAAGCCCCTGTTTTTAAGGCGCTACTCCATTTTATATACTGGGACAAACTGCCCGACATGGAAGAGCTAACGGGCCTGAATACAAAATGGGCTTCGACGTTGATGTATCAGCATTTGCTTGCAGCTGCTGACCGATATGGGTTAGAGAGGCTTTGTATGTTATGCGAATCCAATCTTTGTGAAGATGTTGCCATTAATACAGTTGCAACAACATTAGCGTTGGCTGAACAGCACCATTGTGTCCAGTTAAAATCCGTGTGTCTTAAGTTCGTTTCTTTGCCTGAGAATCTCAGAGCTGTGATGCAGACAGAAGGGTTCGACTACTTAAAAGAAAGCTGTCCGCACGTGTTGACCGATCTACTGGAACACGTTGCTAGAAACAACGAACATTCTCTAGCCATTTGCAGTCACCCAAATGCAATAATACTGGATGGAAGTGATGTTCATGGTAGACGGGTTAAACCCAGACTGTAA 1203 45.14 MGRPCIESSSSSPPLLTTSTSITETVNGEHDFRISGYSLCKGTGIGKYIASDTFTVGGYSWAIYFYPDGKSLEDNASYVSLFIALASDGSDVRALFELTLIDQSGKERHKVHSHFGRALESGPYTLKYRGSMWGYKRFFKRSTLETSDYLKDDCLQVHCCVGVVRSHTEGPKSYSIHVPPSDIGQHFGQLLECGKGTDVSFEVNGETFAAHKLVLAARSPVFRAQLFGPMRDQNVHCIKVEDIEAPVFKALLHFIYWDKLPDMEELTGLNTKWASTLMYQHLLAAADRYGLERLCMLCESNLCEDVAINTVATTLALAEQHHCVQLKSVCLKFVSLPENLRAVMQTEGFDYLKESCPHVLTDLLEHVARNNEHSLAICSHPNAIILDGSDVHGRRVKPRL 400
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi4g01911 400 PANTHER BTB-POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 18 368 IPR045005 GO:0016567(InterPro)
Dapi4g01911 400 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 26 165 IPR008974 GO:0005515(InterPro)
Dapi4g01911 400 CDD MATH 28 161 IPR002083 GO:0005515(InterPro)
Dapi4g01911 400 SMART math-3 32 144 IPR002083 GO:0005515(InterPro)
Dapi4g01911 400 SUPERFAMILY POZ domain 174 304 IPR011333 -
Dapi4g01911 400 FunFam BTB-POZ and math domain 1 173 300 - -
Dapi4g01911 400 SUPERFAMILY TRAF domain-like 24 163 - -
Dapi4g01911 400 CDD BACK-AtBPM-like 303 365 IPR034090 -
Dapi4g01911 400 ProSiteProfiles BTB domain profile. 197 264 IPR000210 GO:0005515(InterPro)
Dapi4g01911 400 SMART BTB-4 197 306 IPR000210 GO:0005515(InterPro)
Dapi4g01911 400 Gene3D - 306 381 - -
Dapi4g01911 400 CDD BTB-POZ-BPM-plant 183 303 - -
Dapi4g01911 400 Pfam MATH domain 30 161 IPR002083 GO:0005515(InterPro)
Dapi4g01911 400 Gene3D Potassium Channel Kv1.1; Chain A 173 301 IPR011333 -
Dapi4g01911 400 ProSiteProfiles MATH-TRAF domain profile. 27 161 IPR002083 GO:0005515(InterPro)
Dapi4g01911 400 Pfam BTB-POZ domain 187 304 IPR000210 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi4g01911 K10523 speckle-type POZ protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
76230 Dapi17g02902 Dapi4g01911
77853 Dapi1g02263 Dapi4g01911
249077 Dapi31g02104 Dapi4g01911
390189 Dapi31g02104 Dapi4g01911
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr20:109549412 Dapi4g01911 Dapi-Chr4:117737520 dispersed
Dapi Dapi-Chr24:11121350 Dapi4g01911 Dapi-Chr4:117737520 dispersed
Dapi Dapi-Chr31:96713051 Dapi4g01911 Dapi-Chr4:117737520 dispersed
Dapi Dapi-Chr3:49880333 Dapi4g01911 Dapi-Chr4:117737520 dispersed
Dapi Dapi-Chr4:117737520 Dapi8g00772 Dapi-Chr8:15827038 dispersed
Dapi Dapi-Chr1:124146555 Dapi4g01911 Dapi-Chr4:117737520 wgd
Dapi Dapi-Chr17:142043127 Dapi4g01911 Dapi-Chr4:117737520 wgd
Dapi Dapi-Chr31:103564990 Dapi4g01911 Dapi-Chr4:117737520 wgd