AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi4g01917 ATGGATTTCTTTAGATCTATATTATCAGATGATCCAGAGCCTGAAACTCCACATAATTACGAAGATTCCGATACAGATCCGCGCCAAAATCAATCGCCAAAACATCATTTAACGGAAGGCGATGAAGACGACGATTCCACTTCCAATATTAATTCGTCAGAAGACGGCAGCGGCAGCGGCAGTGGCGGTGGCGGTGGCGGTGGCGGTTTATGGACCTTCGGAGATCTAGTCAAAACGTTGACCACAAAATCCGAATCAGTATTCGATACGTACCGTCGAGATCTGAAGGAATTCGGATCCGGTTTACGGAAGGAATCGGATCTGTTCCGTGAAGTTGCGAGCCGTGCGGTGAAGGAGTTGCCGGCGTCAATTGACGCCGGTACGTCGGCGATTGACGGAGTATTGAAATCCACGGCGGATATTATAGCGCAAGGTAAGGAAGCTCTTCTTTCACCTTCTGATGTTGATGATTCTGATTATTCTGATAGACATGCTTATAGTGATCGTAGTGGTTTGGATTCGGTTAGGTATAGTCGTTTTGATGCTCAATTGAATGCGATTAGGAGTGATGTAAGAACTTACTGTGAGGATCCTGAGGATTTAGATGATTATAATAAGTGGAAGTTAGGGTTTGTGGTTGGAGATAAGAAGGATGAGATTGAGGAGTTAGTTGGAGAGAATGGAGGATTAGAGGAAATCTATTTAAAACTTGTTCCGAGTGAGGTCGATGATGCGACGTTTTGGTTTAGGTATTATTATAAGGTACATAAGCTTGTACAGCAGGAGGAAATGAGAGCTAAGCTTGTGAAGAGATCGTTGTCGGTAGATGATGAAGAGGAATTAAGTTGGGACGTTGATGATGATGTTGATGAGGATGAAGTTAATACTCGGAGTTCCAAGATTGTTGATGAAGAAGATAAGGAGATGGCGAGCAATGTGGTTAGTGTTGATAAGAACATTGTTGAGGAAGCTAAATCAGTGCCGAAAGCTGATGAAAAGGTTGAAACTAAAGATAATAATGTCGCAGTTGAATCAAACGAATCTTTAATTCAGGAGGATGAAGATCTCGAGTGGGATGAGATTGAAGATATTGGGAAAACTGATGACAAGAACGTGTCTCGTGGTGACTTGACAGACAAAGGCGAGTTGCGTAAGCGATTGAGTACTGCTGCAGATGACGAGGAGGATTTGAGTTGGGATATTGAAGATGACGATGAGCCTGTAAAGCAAGGAGAGGTTCTTTTGCTTTGCTGGGCTCTCGTGTTGGGATGGGCTGTTTTTTCCATGCAGGCCGAAGCCTGCTGCATATTGGGCCGAGAGGCTGCTGCCCAAGCTTCCAATTCTTCATTTTCAGCTTAA 1359 44.0 MDFFRSILSDDPEPETPHNYEDSDTDPRQNQSPKHHLTEGDEDDDSTSNINSSEDGSGSGSGGGGGGGGLWTFGDLVKTLTTKSESVFDTYRRDLKEFGSGLRKESDLFREVASRAVKELPASIDAGTSAIDGVLKSTADIIAQGKEALLSPSDVDDSDYSDRHAYSDRSGLDSVRYSRFDAQLNAIRSDVRTYCEDPEDLDDYNKWKLGFVVGDKKDEIEELVGENGGLEEIYLKLVPSEVDDATFWFRYYYKVHKLVQQEEMRAKLVKRSLSVDDEEELSWDVDDDVDEDEVNTRSSKIVDEEDKEMASNVVSVDKNIVEEAKSVPKADEKVETKDNNVAVESNESLIQEDEDLEWDEIEDIGKTDDKNVSRGDLTDKGELRKRLSTAADDEEDLSWDIEDDDEPVKQGEVLLLCWALVLGWAVFSMQAEACCILGREAAAQASNSSFSA 452
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi4g01917 452 SMART wurzfinal6 207 259 IPR005607 -
Dapi4g01917 452 MobiDBLite consensus disorder prediction 1 68 - -
Dapi4g01917 452 PANTHER SYNAPSE-ASSOCIATED PROTEIN 26 400 IPR051494 GO:0005737(PANTHER)
Dapi4g01917 452 MobiDBLite consensus disorder prediction 1 43 - -
Dapi4g01917 452 Pfam BSD domain 207 263 IPR005607 -
Dapi4g01917 452 SUPERFAMILY BSD domain-like 176 265 IPR035925 -
Dapi4g01917 452 Gene3D BSD domain 168 270 IPR035925 -
Dapi4g01917 452 ProSiteProfiles BSD domain profile. 207 259 IPR005607 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi4g01917 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
260301 Dapi20g01866 Dapi4g01917
264904 Dapi4g01917 Dapi20g01866
385620 Dapi20g01866 Dapi4g01917
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr26:8610755 Dapi4g01917 Dapi-Chr4:117929419 dispersed
Dapi Dapi-Chr32:10847534 Dapi4g01917 Dapi-Chr4:117929419 dispersed
Dapi Dapi-Chr18:25305234 Dapi4g01917 Dapi-Chr4:117929419 transposed
Dapi Dapi-Chr6:44393890 Dapi4g01917 Dapi-Chr4:117929419 transposed
Dapi Dapi-Chr20:109790515 Dapi4g01917 Dapi-Chr4:117929419 wgd