AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi4g01940 ATGGCCTCTTTGACACGTGTCCTCCTTCCACAATTTCCCCAATGCAACAATTCTACCGGTTCCATTTCCATTAAGCTAAACCCTAGCGCTTCCAGAAGGCGATTCTCAGTTTTCTCCATGGCGGAATCCAACCGTACCACCGTCCTCGTCACCGGAGCCGGCGGCCGAACCGGTCAAATTGTTTATAAGAAGCTTAAGGAGAGGTCAGGGGAGTATATTGCACGAGGTTTGGTTAGAAGCGAGGAGAGTAAGGAGAAAATTGGCGGAGCCGATGACGTATTGATAGGAGATATAACGAACGCAGGAAGTCTTGTTCCGGCTATTGAAGGCACAGATGCTATTGTTATTCTTACCAGTGCAGTCCCGAAAATGAAACCTGGTTTTGATCCAACTAAAGGTGGAAGACCTGAATTCTATTTTGAAGAGGGATCGTTTCCTGAGCAAGTTGACTGGGAAGGGCAAAAGAATCAAATAGATGCCGCTAAAGCCGCTGGAGTGAAGCACATTGTACTGGTTGGGTCCATGGGTGGAACAAATATTAACCATCCTTTAAACAGCCTCGGAAACGGGAATATACTGGTCTGGAAGAGAAAGGCTGAACAGTATCTAGCAGATTCTGGGATTCCATACACGATTATAAGGGCTGGGGGTTTGCAAGACAAGGAAGGTGGTGTTCGGGAGCTGCTGGTGGGAAAAGATGATGAGCTTCTTCAGACCGAAACTAAAACCATTGCCCGAGCAGATGTGGCTGAAGTCTGTATACAGGCGTTGCAATTTGAGGAGGCGAAGTTTAAGGCATTTGATCTTGCCTCCAAACCTGAGGGAAGTGGGACGCCGACAAAAGACTTCAAGAGCTTATTTTCCCAGGTCACTACTCGGTTTTAA 885 47.23 MASLTRVLLPQFPQCNNSTGSISIKLNPSASRRRFSVFSMAESNRTTVLVTGAGGRTGQIVYKKLKERSGEYIARGLVRSEESKEKIGGADDVLIGDITNAGSLVPAIEGTDAIVILTSAVPKMKPGFDPTKGGRPEFYFEEGSFPEQVDWEGQKNQIDAAKAAGVKHIVLVGSMGGTNINHPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGVRELLVGKDDELLQTETKTIARADVAEVCIQALQFEEAKFKAFDLASKPEGSGTPTKDFKSLFSQVTTRF 294
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi4g01940 294 PANTHER NITROGEN METABOLIC REGULATION PROTEIN NMR-RELATED 41 294 IPR044163 GO:0009507(PANTHER)|GO:0016491(InterPro)
Dapi4g01940 294 FunFam Uncharacterized protein At5g02240 44 294 - -
Dapi4g01940 294 CDD SDR-a5 47 269 - -
Dapi4g01940 294 Pfam NAD(P)H-binding 52 258 IPR016040 -
Dapi4g01940 294 Gene3D - 43 294 - -
Dapi4g01940 294 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 46 272 IPR036291 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi4g01940 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
260313 Dapi20g01885 Dapi4g01940
264916 Dapi4g01940 Dapi20g01885
385636 Dapi20g01885 Dapi4g01940
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr20:16905119 Dapi4g01940 Dapi-Chr4:118631334 dispersed
Dapi Dapi-Chr23:3739152 Dapi4g01940 Dapi-Chr4:118631334 dispersed
Dapi Dapi-Chr4:18483279 Dapi4g01940 Dapi-Chr4:118631334 dispersed
Dapi Dapi-Chr4:118631334 Dapi7g00158 Dapi-Chr7:3229169 dispersed
Dapi Dapi-Chr20:110667899 Dapi4g01940 Dapi-Chr4:118631334 wgd