AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi4g01944 ATGGATATCCTGAAAGAAGAGTTACTAAAGAAAAGGAAAACTCTCGCCGAACAGACCGGCGGCCGTAAGGTCTTCAAGCGTTCCGAAATCGAACAGAAACGAATCCAAGACCTTCGCGAAGAAGAAAAACGAGACGCCGAAGCCAAACGCCTCCGTCAAAACCAAAACCAAAACAATCCTAACTCATCCGATCCAAACTCCTCATCAAACCCTAACTCCAACCTCGATTCCACCAACTCCAAACCTGAATCCGGCGCCAGCTCATCTTCCAAAGCCGTTATAACCGACGAACAGAAAATCGACTCACTAAACCTACCTAAACCGGAGGTTATTCGTCGCCTCCGGTTTTTAAAACAACCGGTTACTTTGTTTGGAGAGAGTGACGATGACCGGTTGGACCGGTTGAAATACGTATTGAAAGCCGGTTTATTTGAGCTTGACGATAGTGATATGACGGAAGGGCAAACGAATGATTTTTTACGAGATATTGTTGAATTAAAGAAGAGGCAGAAGTCAGGGATAATAAGTGAACGGAAACGGAGGGCGAATGAGGAGTCTACTGAGGATAAGGATGGAGGAGGAGGTGAGGATGATGTTAGTGGCGATGGCGGTTCGTCTGGTAATGATCAGGATAAGGATTTTAAACGAATGAAGGCGAATTTTGTTGAGCTTTGTGATGAGGATAAGATTTTAGTGTTTTTTAAGAAGTTGTTGATTGAGTGGAATCAGGAGTTGGATGAGATGACTGAAACTGAGAAGAGGACTGCGAAAGGGAAGTCGACTTTTGCTACTTTTAAGCAGTGCGCGAGGTATTTGAATCCGCTGTTCAAGTTCTGCAGGAAGAAGGTTCTGCCTGATGACATTAGACAAGCATTAATGCTAGTGGTGAACTGCTGCATGAAGCGAGATTACTTAGCTGCAATGGATCATTACATCAGAATGGCAATCGGGAACGCACCATGGCCCATTGGTGTTACTATGGTTGGTATTCACGAACGTTCAGCTCGTGAAAAAATTTACACCAACAGTGTGGCCCACGTGATGAACGACGAAACAACTCGAAAATATTTGCAGTCGGTTAAACGATTAATGACATTTTGTCAAAGACGTTACCCAACAATGCCTTCTAAGGCGGTGGAGTTTAATAGTTTGGCAAATGGTAGTGACTTGCAAGCTTTATTGGCAGAGGAAAGGAGGAATGCATCAGGTGGAAGTCAACAACAAGAAGATAGACTTATGTTGATGCCTCCACCGGCACCAAAGGATGGCTAA 1272 44.26 MDILKEELLKKRKTLAEQTGGRKVFKRSEIEQKRIQDLREEEKRDAEAKRLRQNQNQNNPNSSDPNSSSNPNSNLDSTNSKPESGASSSSKAVITDEQKIDSLNLPKPEVIRRLRFLKQPVTLFGESDDDRLDRLKYVLKAGLFELDDSDMTEGQTNDFLRDIVELKKRQKSGIISERKRRANEESTEDKDGGGGEDDVSGDGGSSGNDQDKDFKRMKANFVELCDEDKILVFFKKLLIEWNQELDEMTETEKRTAKGKSTFATFKQCARYLNPLFKFCRKKVLPDDIRQALMLVVNCCMKRDYLAAMDHYIRMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQALLAEERRNASGGSQQQEDRLMLMPPPAPKDG 423
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi4g01944 423 Coils Coil 38 58 - -
Dapi4g01944 423 MobiDBLite consensus disorder prediction 394 423 - -
Dapi4g01944 423 PANTHER PRE-MRNA SPLICING FACTOR-RELATED 1 384 IPR039979 GO:0000350(PANTHER)|GO:0005682(PANTHER)|GO:0008380(InterPro)|GO:0046540(PANTHER)|GO:0071021(PANTHER)
Dapi4g01944 423 MobiDBLite consensus disorder prediction 16 95 - -
Dapi4g01944 423 MobiDBLite consensus disorder prediction 16 51 - -
Dapi4g01944 423 SUPERFAMILY PRP4-like 97 140 IPR036285 -
Dapi4g01944 423 Gene3D - 77 158 IPR036285 -
Dapi4g01944 423 FunFam Pre-mRNA-splicing factor 18 78 155 - -
Dapi4g01944 423 SMART pr04-2 105 157 IPR014906 -
Dapi4g01944 423 Gene3D Functional domain of the splicing factor Prp18 206 375 - -
Dapi4g01944 423 MobiDBLite consensus disorder prediction 175 197 - -
Dapi4g01944 423 MobiDBLite consensus disorder prediction 52 95 - -
Dapi4g01944 423 MobiDBLite consensus disorder prediction 175 211 - -
Dapi4g01944 423 Pfam pre-mRNA processing factor 4 (PRP4) like 110 137 IPR014906 -
Dapi4g01944 423 FunFam Pre-mRNA-splicing factor 18 204 375 - -
Dapi4g01944 423 Pfam Prp18 domain 232 373 IPR004098 GO:0005681(InterPro)|GO:0008380(InterPro)
Dapi4g01944 423 SUPERFAMILY Functional domain of the splicing factor Prp18 208 373 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi4g01944 K12817 pre-mRNA-splicing factor 18