AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi4g01967 ATGGGATGGAAAGCAGCTCAGAAGCTCATACATCACTGGAAGATTTTGAGAGGAGATAATGTCATGATAATTAGGGGCAAAGATAGGGGTGAAACTGGCACTATAAAACGCGTGATTCGCACTCAGAATCGTGTTATTGTTGAGGGAAAGAACTTGGTAAAGAAACATATAAAGCAAGGGCAAGGCCATGAAGGTGGAATATTTACAGTAGAAGCCCCTCTTCATGTCTCGAATGTTCAAATTGTTGATCCAGTTACAGGGCAGCCTTGTAAAGTTGGTATAAGGTATCAAGAAGATGGTACTAAAGTAAGAGTATCAAGAGGCATAGGCGCATCAGGGTCCATTATTCCTCGTCCCGAGATTTTGAAAATTAGGGCCACACCACGCCCGACAATCGCGGGGCCGAAGGATACTCCTATAGAGCTGGTGCAGGAGAAGACATATGATGCTAAAACAGGTAAGGGCATGCCAGATCTTTAG 480 44.17 MGWKAAQKLIHHWKILRGDNVMIIRGKDRGETGTIKRVIRTQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQIVDPVTGQPCKVGIRYQEDGTKVRVSRGIGASGSIIPRPEILKIRATPRPTIAGPKDTPIELVQEKTYDAKTGKGMPDL 159
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi4g01967 159 Gene3D - 4 111 IPR014722 -
Dapi4g01967 159 Pfam KOW motif 17 48 IPR005824 -
Dapi4g01967 159 Pfam Ribosomal proteins 50S L24-mitochondrial 39S L24 51 109 IPR003256 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Dapi4g01967 159 SMART kow-9 14 41 IPR005824 -
Dapi4g01967 159 SUPERFAMILY Translation proteins SH3-like domain 10 108 IPR008991 -
Dapi4g01967 159 Hamap Large ribosomal subunit protein uL24 [rplX]. 13 107 IPR003256 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Dapi4g01967 159 ProSitePatterns Ribosomal protein L24 signature. 18 35 IPR005825 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Dapi4g01967 159 CDD KOW-RPL26 18 81 IPR041988 GO:0003723(InterPro)
Dapi4g01967 159 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN L24 6 158 IPR003256 GO:0003735(InterPro)|GO:0005739(PANTHER)|GO:0005840(InterPro)|GO:0006412(PANTHER)|GO:0006412(InterPro)
Dapi4g01967 159 NCBIfam 50S ribosomal protein L24 14 107 IPR003256 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi4g01967 K02895 large subunit ribosomal protein L24
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
390162 Dapi31g02025 Dapi4g01967
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr31:99736049 Dapi4g01967 Dapi-Chr4:119528290 wgd