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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi4g01969 ATGACACAACGACTGTCAAGTGGCAGTCAGCGAGCTGTTCTCTGTTCTATCAATCGTTACAAGAACTGCATAAACCCTAGGAAAACTGTTGTGGTAGCGAATCATACGCATATGGATACCGAAGCAAATGGAGAAAACGCCTCTTTGGTTCTGATAAAGCAAGGCGCTGAAGCTAGAGTTTTTGAGTCGACGTTTGCTGGAAGGAAGTCTATTGTTAAGGAACGGTTCTCAAAGAAGTACAGGCATCCGACTTTAGATTCAAAGCTCACACTCAAGCGGTTAAATGCGGAAGCTAGGTGTATGACAAAGGCTAGACGGCTTGGAGTTTCTACTCCTGTGCTTTATGCAGTAGACCCTATATCACATACACTCACTTTTGAGTATATTGAAGGTCCTTCAATCAAAGACATATTTCTTGAATTTGGATTGCAAGGAGTTGTTGAAGAAAAGATGGATGATATCGCCTTGCAAATTGGGGATACGATTGGAAAGTTACATGATGGTGGGGTCGTTCATGGGGATTTGACCACGTCAAATATGTTATGGCGTAGTGGCACGAACCAGCTGGTATTGATTGATTTTGGTTTGAGCTTTGTATCAACCCTTCCGGAAGATAAAGCTGTTGATCTATATGTACTTGAGCGAGCCTTGCTGTCGATGCATTCTTCTTGTGGAAATGTGATGGATAAGATACTTGCAGCATATAGGAAGTCTTCAAAGCAATGGTCATCCACATTTAACAAACTTGGTCAAGTGAGACTACGAGGCAGAAAACGAACCATGATTGGATGA 792 42.3 MTQRLSSGSQRAVLCSINRYKNCINPRKTVVVANHTHMDTEANGENASLVLIKQGAEARVFESTFAGRKSIVKERFSKKYRHPTLDSKLTLKRLNAEARCMTKARRLGVSTPVLYAVDPISHTLTFEYIEGPSIKDIFLEFGLQGVVEEKMDDIALQIGDTIGKLHDGGVVHGDLTTSNMLWRSGTNQLVLIDFGLSFVSTLPEDKAVDLYVLERALLSMHSSCGNVMDKILAAYRKSSKQWSSTFNKLGQVRLRGRKRTMIG 263
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi4g01969 263 SUPERFAMILY Protein kinase-like (PK-like) 51 211 IPR011009 -
Dapi4g01969 263 FunFam TP53-regulating kinase isoform X1 57 129 - -
Dapi4g01969 263 Gene3D Transferase(Phosphotransferase) domain 1 142 260 - -
Dapi4g01969 263 Pfam Protein kinase domain 77 198 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Dapi4g01969 263 ProSiteProfiles Protein kinase domain profile. 46 263 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Dapi4g01969 263 FunFam Protein kinase superfamily protein 144 260 - -
Dapi4g01969 263 PANTHER NON-SPECIFIC SERINE-THREONINE PROTEIN KINASE 39 263 IPR022495 GO:0000408(PANTHER)|GO:0004674(PANTHER)|GO:0004674(InterPro)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0006468(PANTHER)|GO:0070525(PANTHER)
Dapi4g01969 263 SMART serkin-6 46 262 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Dapi4g01969 263 Gene3D Phosphorylase Kinase; domain 1 57 129 - -
Dapi4g01969 263 NCBIfam KEOPS complex kinase-ATPase Bud32 55 257 IPR022495 GO:0004674(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi4g01969 K08851 TP53 regulating kinase and related kinases [EC:2.7.11.1]
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Event-related genes

Select Gene_1 Gene_2 Event_name
390161 Dapi31g02024 Dapi4g01969
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr31:99728729 Dapi4g01969 Dapi-Chr4:119606787 wgd
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Dapi Pkinase 5.3e-10 CL0016 PK TKL-Pl-4