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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi4g01976 ATGGAGAATTATGAAATACTAGAACAGATTGGTAAAGGATCATTTGCTTCTGCTCTGCTTGTGAGGCATAAACATGAAAAGAAAAGGTATGTTTTGAAGAAGATTCGACTTGCTCGTCAGTCTGATAGGACTCGCAGATCTGCTCTCTTGGAGATGGAACTTATTTCCACTGTACAAAATCCTTTTATAGTGGAATACAAGGATTCATGGGTTGAAAAGGGTTGCTATGCATGCATTGTTATAGCATACTGTGAAGGAGGAGACATGGCGGAAGCAATAAAAAAAGCCAACGGTGTTCATTTTCCAGAAGAGAAACTCTGCAAATGGCTCGTTGAACTACTGGTGGCACTTGATTATTTGCATGTTAATCATATTATTCATCGTGATGTCAAGTGTTCGAATATATTCCTAACAAGAGATCAAGATATCCGACTTGGTGATTTCGGTCTTGCGAAAATGTTGACTTCTGATGATCTTGCATCCTCGGTTGTGGGAACTCCCAGTTATATGTGCCCTGAACTTCTTGCAGATATACCTTATGGTTCAAAATCAGACATATGGTCATTAGGATGCTGCATGTATGAAATGACCGCGTTCAAGTCTGCATTTAAAGCTTTTGACATGCAGTCTCTCATCAACAAAATAAATAAATCCATAGTGTCTCCACTCCCAACCATGTATTCTGGCACATTCCGAGGGCTTATTAAGAGTATGCTGCGGAAAAATCCAGAAATGAGACCAAGTGCTGCTGATTTGCTCAAACATTCTCATCTTCAACCTTATGTACTTAAACTCCATCTTAACATCAACGGGCCTAGACGCCATACACTTACAGCCCAGTGGTCAGATTACAACTATGAAAAGAAAACCACCTTCATTGAGCCCGAACCTCATACAGTTAATCTTCAAACTGGAAAAAGACCATCTTTTAGCAGTGACAGGGGTTTAAATCCTAGTATATCCGAACGCGATCAATATTCTTCTTGTTCTCAAACTTCAACAAGAAAGCTATCTATTGGCAGTGTTGAAGAGTATATACAAACAGAGAAATTTGTAACTGCCAGGTCAGCAAATGCTGCCAGAACTCCAAGAGTCACTCCTGTAAAACCTTCTGTTAGCACTCCCAGAAAACAAATTGCCTCACCAAATGTAATAAGACGGAGTTCAGATCGTGATGTGCTTCCAATTTCACAAACTCCGGCCAGCATATCGTCACGAACAACTCGTCGTGCATCTTTACCCTTATCAACAAGGGCCACGAAACCACATTTGGGTTTCGAATCACCCGATGTATCAGTCAACGCTCCACGTATCGACAAAATGACCGAACTACCCTTAACATACACACAACAACCCATGATCTTACCAGCCCGTAAAACTTCTTCAACATCTGCTCAATGCTCTTCTGCCACTTCCTCAAACACCATCCCGGACCGGTCCGTTACAATCGACACGTGTACAGTCAAGACCGTGAAACCAAGCCCGAGCCACCAAACAAGTGCCGGTGGGGCCCTCTCCACAAACAACAGGAGCGATGACACGTCATCTGATTCACGTGGACAGAGGCGTAGGTTTGACACGTCATCGTACCAACAGCGAGCCGAGGCATTAGAAGGATTGTTGGAGTTCAGTGCACAGCTTATGCAACAAGAACGGATAGAAGAGTTGGCTGTTTTGTTGAAACCGTTCGGGCCCGAAAAGGTGTCGCCTAGAGAAACCGCAATTTGGTTGTCGAAGAGCTTGAAGAGAACTGGGACCGTGACAGGACCTGGTGCTAGCGTTGTGGGGAATTTGTAA 1797 43.41 MENYEILEQIGKGSFASALLVRHKHEKKRYVLKKIRLARQSDRTRRSALLEMELISTVQNPFIVEYKDSWVEKGCYACIVIAYCEGGDMAEAIKKANGVHFPEEKLCKWLVELLVALDYLHVNHIIHRDVKCSNIFLTRDQDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCMYEMTAFKSAFKAFDMQSLINKINKSIVSPLPTMYSGTFRGLIKSMLRKNPEMRPSAADLLKHSHLQPYVLKLHLNINGPRRHTLTAQWSDYNYEKKTTFIEPEPHTVNLQTGKRPSFSSDRGLNPSISERDQYSSCSQTSTRKLSIGSVEEYIQTEKFVTARSANAARTPRVTPVKPSVSTPRKQIASPNVIRRSSDRDVLPISQTPASISSRTTRRASLPLSTRATKPHLGFESPDVSVNAPRIDKMTELPLTYTQQPMILPARKTSSTSAQCSSATSSNTIPDRSVTIDTCTVKTVKPSPSHQTSAGGALSTNNRSDDTSSDSRGQRRRFDTSSYQQRAEALEGLLEFSAQLMQQERIEELAVLLKPFGPEKVSPRETAIWLSKSLKRTGTVTGPGASVVGNL 598
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi4g01976 598 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Dapi4g01976 598 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524(InterPro)
Dapi4g01976 598 CDD STKc-Nek 3 258 - -
Dapi4g01976 598 MobiDBLite consensus disorder prediction 458 530 - -
Dapi4g01976 598 Pfam Protein kinase domain 4 256 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Dapi4g01976 598 SMART serkin-6 4 258 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Dapi4g01976 598 PANTHER SERINE-THREONINE-PROTEIN KINASE NEK 4 552 IPR050660 GO:0004674(PANTHER)
Dapi4g01976 598 ProSitePatterns Serine-Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Dapi4g01976 598 MobiDBLite consensus disorder prediction 298 333 - -
Dapi4g01976 598 MobiDBLite consensus disorder prediction 357 381 - -
Dapi4g01976 598 SUPERFAMILY Protein kinase-like (PK-like) 1 259 IPR011009 -
Dapi4g01976 598 MobiDBLite consensus disorder prediction 367 381 - -
Dapi4g01976 598 MobiDBLite consensus disorder prediction 458 514 - -
Dapi4g01976 598 MobiDBLite consensus disorder prediction 515 529 - -
Dapi4g01976 598 FunFam Serine-threonine-protein kinase Nek2 84 274 - -
Dapi4g01976 598 Gene3D Transferase(Phosphotransferase) domain 1 84 269 - -
Dapi4g01976 598 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Dapi4g01976 598 FunFam Probable serine-threonine-protein kinase nek1 1 83 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi4g01976 K08857 serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
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Event-related genes

Select Gene_1 Gene_2 Event_name
82280 Dapi4g01976 Dapi7g02501
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr15:18402304 Dapi4g01976 Dapi-Chr4:119756039 dispersed
Dapi Dapi-Chr15:77870097 Dapi4g01976 Dapi-Chr4:119756039 dispersed
Dapi Dapi-Chr19:24504104 Dapi4g01976 Dapi-Chr4:119756039 dispersed
Dapi Dapi-Chr31:29881549 Dapi4g01976 Dapi-Chr4:119756039 dispersed
Dapi Dapi-Chr31:81627456 Dapi4g01976 Dapi-Chr4:119756039 dispersed
Dapi Dapi-Chr3:23049775 Dapi4g01976 Dapi-Chr4:119756039 dispersed
Dapi Dapi-Chr4:119756039 Dapi4g02424 Dapi-Chr4:132036835 dispersed
Dapi Dapi-Chr10:2403735 Dapi4g01976 Dapi-Chr4:119756039 transposed
Dapi Dapi-Chr20:112173997 Dapi4g01976 Dapi-Chr4:119756039 transposed
Dapi Dapi-Chr4:119756039 Dapi7g02501 Dapi-Chr7:110632480 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Dapi26g00464 DST 366 460 MAP Kinase Kinase gene family AT5G40440 32.292 7.92e-07 44.7
Dapi18g00272 ACH 1 310 MAP Kinase Kinase gene family AT1G73500 63.898 9.21e-137 388.0
Dapi18g01077 ACH,WGDA 1 345 MAP Kinase Kinase gene family AT3G21220 72.08 4.73e-176 491.0
Dapi19g00897 . 1 406 MAP Kinase Kinase gene family AT5G40440 83.005 0.0 714.0
Dapi1g02067 ACH,DST 15 350 MAP Kinase Kinase gene family AT1G51660 65.882 1.56e-154 436.0
Dapi10g02173 . 67 333 MAP Kinase Kinase gene family AT4G29810 29.889 1.20e-34 134.0
Dapi10g00487 DST 366 460 MAP Kinase Kinase gene family AT5G40440 32.292 7.92e-07 44.7
Dapi3g00678 . 1 516 MAP Kinase Kinase gene family AT5G40440 79.07 0.0 867.0
Dapi4g02424 . 43 350 MAP Kinase Kinase gene family AT4G29810 30.0 2.47e-38 144.0
Dapi1g02825 ACH,WGDA 8 356 MAP Kinase Kinase gene family AT5G56580 83.668 0.0 614.0
Dapi15g01319 . 47 350 MAP Kinase Kinase gene family AT4G29810 30.293 2.55e-40 148.0
Dapi31g01713 . 47 350 MAP Kinase Kinase gene family AT4G29810 30.619 5.02e-41 150.0
Dapi25g01967 . 54 135 MAP Kinase Kinase gene family AT4G29810 63.095 5.85e-32 115.0
Dapi6g00334 WGDA 7 342 MAP Kinase Kinase gene family AT3G21220 72.414 2.33e-176 491.0
Dapi18g00074 ACH 8 354 MAP Kinase Kinase gene family AT5G56580 81.556 0.0 602.0
Dapi18g00032 WGDA 1 354 MAP Kinase Kinase gene family AT4G29810 70.056 0.0 535.0
Dapi31g00180 . 139 263 MAP Kinase Kinase gene family AT4G29810 40.625 4.42e-16 77.4
Dapi2g00282 ACH 1 310 MAP Kinase Kinase gene family AT1G73500 64.217 2.08e-137 389.0
Dapi6g00026 WGDA 1 354 MAP Kinase Kinase gene family AT4G29810 67.514 0.0 523.0
Dapi2g00035 WGDA 1 354 MAP Kinase Kinase gene family AT4G29810 70.056 0.0 535.0
Dapi2g00074 ACH 8 354 MAP Kinase Kinase gene family AT5G56580 81.844 0.0 606.0
Dapi22g00027 WGDA 1 328 MAP Kinase Kinase gene family AT4G29810 68.598 3.11e-174 490.0
Dapi4g01976 ACH 67 333 MAP Kinase Kinase gene family AT4G29810 30.627 2.89e-34 132.0
Dapi22g00361 ACH,WGDA 1 342 MAP Kinase Kinase gene family AT3G21220 71.671 3.53e-174 486.0
Dapi17g02642 ACH,DST 15 350 MAP Kinase Kinase gene family AT1G51660 65.396 4.24e-154 435.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Dapi Pkinase 1.1e-61 CL0016 PK NEK