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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi4g01979 ATGATGGAAGCTACACGCAACCTCTTTGAGTTTATTGCCTCTCATGGTTACACTATCGTTGCTCCCGGTCAAACTTTGCTTGGGATCTTGAAGGGTCTATGTGTATTTTCCGCGGTTGGTGATGTGGACGATGCGGCCGAAACAGCCAACTGGATAGACAAAAACCATGGCGAAAACCTCCAAAGTGTACTCCCAAATGATGTCTCACCGGATCTTGAGAATGTAGCACTAGCCGGCCATAGCAAAGGAGGGAAAGCGACATTTGCACTAGCATTAGGTCATGCTAATACAAGCCTTAAGTTCAAGGCTCTTATTGGTTTAGATCCTGTTGCCGGCCGAGATACAACAAACAGGCTCGAGCCAAAAATCTTAAACTACATCCCCCAAAATTTCAACATATCCCTGCCTATAGCCCTAATTGGGACAGGCTTAGGTGATGATGGGTCCAAGGAATTTGGTCACATGGGCATGGTTGATAATTGGTTGGTTAGGTTGTCGGGTATTTTTGTGTGCAAGACCGGGAAAGGTTCTTATGCGGATATGAGAAGAGCTTGTGGAGGCATTTTTGTTGCCTTTCTCAAGACTTATATGTTTGATGATGAGGAAGATCTCACCGCCATCGTTGATTCACCAGGTTCTCTTGCTCCAATCAAGCTCGATCCAGTTTTATGGCTTCAATCATGA 684 45.32 MMEATRNLFEFIASHGYTIVAPGQTLLGILKGLCVFSAVGDVDDAAETANWIDKNHGENLQSVLPNDVSPDLENVALAGHSKGGKATFALALGHANTSLKFKALIGLDPVAGRDTTNRLEPKILNYIPQNFNISLPIALIGTGLGDDGSKEFGHMGMVDNWLVRLSGIFVCKTGKGSYADMRRACGGIFVAFLKTYMFDDEEDLTAIVDSPGSLAPIKLDPVLWLQS 227
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi4g01979 227 PANTHER CHLOROPHYLLASE-2, CHLOROPLASTIC 150 223 - -
Dapi4g01979 227 Pfam Cutinase 6 147 IPR041127 -
Dapi4g01979 227 Pfam Chlorophyllase 150 220 IPR017395 -
Dapi4g01979 227 SUPERFAMILY alpha-beta-Hydrolases 5 115 IPR029058 -
Dapi4g01979 227 Gene3D alpha-beta hydrolase 2 215 IPR029058 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi4g01979 K08099 chlorophyllase [EC:3.1.1.14]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr4:119863638 Dapi7g01883 Dapi-Chr7:95777563 dispersed
Dapi Dapi-Chr4:119820146 Dapi4g01979 Dapi-Chr4:119863638 tandem