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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi4g02009 ATGGCATCCATCTCCACTTCCATTTCTACCACATCACCGTCCTTCTCGTTGCTCCGAAAGCCGACCACCACCACCCACGGTTCTCCGGTTCTCGGATTGCCATCAATGAGCAAGATGGGGAAAATGAGATGTTCCATGGAAGGTAAGCCCGCTGTGACATCGGAGGACGTTGCATCGAGGTTGAGGATGGGTGCGTCCTCATTAATGGCTGCGACGGTGGCTGCAACCATGTCGAGCCCCGCTGCCATGGCTCTAGTGGACGAGAGAATGAGCACGGAAGGGACCGGGCTGCCCTTTGGGCTAAGCAACAACCTTCTCGGATGGATCCTTTTTGGTGTGTTCGGTTTGATTTGGACACTTTACTTTGTCTACACCGGTAGCCTTGAAGAGGATGAGGAGTCTGGTTTATCGCTTTAA 417 53.24 MASISTSISTTSPSFSLLRKPTTTTHGSPVLGLPSMSKMGKMRCSMEGKPAVTSEDVASRLRMGASSLMAATVAATMSSPAAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTLYFVYTGSLEEDEESGLSL 138
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi4g02009 138 MobiDBLite consensus disorder prediction 1 31 - -
Dapi4g02009 138 Pfam Photosystem II reaction centre W protein (PsbW) 1 138 IPR009806 GO:0009507(InterPro)|GO:0009523(InterPro)|GO:0015979(InterPro)
Dapi4g02009 138 PANTHER PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC 1 138 IPR009806 GO:0009507(InterPro)|GO:0009523(InterPro)|GO:0009535(PANTHER)|GO:0015979(InterPro)|GO:0042549(PANTHER)
Dapi4g02009 138 MobiDBLite consensus disorder prediction 1 32 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi4g02009 K02721 photosystem II PsbW protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
260326 Dapi20g01912 Dapi4g02009
264929 Dapi4g02009 Dapi20g01912
385651 Dapi20g01912 Dapi4g02009
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr4:121342158 Dapi4g02010 Dapi-Chr4:121387625 tandem
Dapi Dapi-Chr11:4614543 Dapi4g02009 Dapi-Chr4:121342158 wgd
Dapi Dapi-Chr20:112074116 Dapi4g02009 Dapi-Chr4:121342158 wgd
Dapi Dapi-Chr27:6940395 Dapi4g02009 Dapi-Chr4:121342158 wgd