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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi4g02023 ATGTTCTTCAATGCACAATCAATAATGTCAACCGACTGTCAAGGAAAGAGTTCATGGCCGGAGCTTGTAGGGGCAAGGGGAGAAGCAGCGGCCGCTAGGATTGAGGAAGAGAATCCTCTGGTCGATGCTATCGTCGTAGTAGAGGGAAGGGATAATGTCATTCTTGATGTTCGATGCAACCGCGTGTGGGTCTGGGTGAACTCTAATGCGGTGGTTGTTCGAACTCCTTCCATTGGCTAA 240 49.58 MFFNAQSIMSTDCQGKSSWPELVGARGEAAAARIEEENPLVDAIVVVEGRDNVILDVRCNRVWVWVNSNAVVVRTPSIG 79
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi4g02023 79 ProSitePatterns Potato inhibitor I family signature. 19 30 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Dapi4g02023 79 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 12 79 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Dapi4g02023 79 Pfam Potato inhibitor I family 16 79 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Dapi4g02023 79 SUPERFAMILY CI-2 family of serine protease inhibitors 13 79 IPR036354 -
Dapi4g02023 79 Gene3D Trypsin Inhibitor V, subunit A 9 78 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi4g02023 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr4:121826433 Dapi4g02023 Dapi-Chr4:122006556 dispersed
Dapi Dapi-Chr4:122006556 Dapi4g02025 Dapi-Chr4:122108115 dispersed
Dapi Dapi-Chr4:121999427 Dapi4g02023 Dapi-Chr4:122006556 tandem
Dapi Dapi-Chr4:122006556 Dapi4g02024 Dapi-Chr4:122013762 tandem