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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi4g02025 ATGTCGACCAACTGTGAAGGAAAGCGTTCATGGCCGGAGCTTGTAGGGGCACGAGGATCAGCCGCGTCGGCTACGATTGAAAGAGAGAATCCACGGGTCGATGCTATTGTGGTGGTGGAAGGAAGGGATATGGTCACAGCTGATTTCCGATGCGACCGTGTGTGGGTGTGGGTGAACCGTAGTGGGGTGGTCCTTCGAACTCCTTCCATTGGCTAA 216 55.09 MSTNCEGKRSWPELVGARGSAASATIERENPRVDAIVVVEGRDMVTADFRCDRVWVWVNRSGVVLRTPSIG 71
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi4g02025 71 PRINTS Potato inhibitor I signature 36 47 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Dapi4g02025 71 PRINTS Potato inhibitor I signature 48 58 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Dapi4g02025 71 PRINTS Potato inhibitor I signature 10 23 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Dapi4g02025 71 Pfam Potato inhibitor I family 8 71 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Dapi4g02025 71 ProSitePatterns Potato inhibitor I family signature. 11 22 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Dapi4g02025 71 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 4 71 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Dapi4g02025 71 Gene3D Trypsin Inhibitor V, subunit A 1 70 - -
Dapi4g02025 71 SUPERFAMILY CI-2 family of serine protease inhibitors 4 71 IPR036354 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi4g02025 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
260336 Dapi20g01926 Dapi4g02025
264939 Dapi4g02025 Dapi20g01926
385665 Dapi20g01926 Dapi4g02025
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr20:112737054 Dapi4g02025 Dapi-Chr4:122108115 dispersed
Dapi Dapi-Chr4:122006556 Dapi4g02025 Dapi-Chr4:122108115 dispersed
Dapi Dapi-Chr4:122013762 Dapi4g02025 Dapi-Chr4:122108115 tandem
Dapi Dapi-Chr4:122108115 Dapi4g02026 Dapi-Chr4:122111217 tandem