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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi4g02026 ATGTCGACCAACTGTGAAGGAAAGCTTACATGGCCGGAGCTTGTAGGGGCACAAGGATCAGCCGCATCAGCTACGATCGAAAGAGAGAATCCACGCGTTGATGCTATTGTGGTGGTGGAGGGAAGGGATGTGGTCATAACTGATTTCCGATGCGACCGAGTGTGGGTGTGGGTGAACCCTAGTGGGGTAGTCGTTCGAACTCCTTCCATTGGTTAA 216 52.31 MSTNCEGKLTWPELVGAQGSAASATIERENPRVDAIVVVEGRDVVITDFRCDRVWVWVNPSGVVVRTPSIG 71
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi4g02026 71 Pfam Potato inhibitor I family 8 71 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Dapi4g02026 71 SUPERFAMILY CI-2 family of serine protease inhibitors 4 71 IPR036354 -
Dapi4g02026 71 ProSitePatterns Potato inhibitor I family signature. 11 22 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Dapi4g02026 71 Gene3D Trypsin Inhibitor V, subunit A 1 70 - -
Dapi4g02026 71 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 4 71 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi4g02026 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
260337 Dapi20g01927 Dapi4g02026
264940 Dapi4g02026 Dapi20g01927
385666 Dapi20g01927 Dapi4g02026
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr20:112779950 Dapi4g02026 Dapi-Chr4:122111217 dispersed
Dapi Dapi-Chr4:122013762 Dapi4g02026 Dapi-Chr4:122111217 dispersed
Dapi Dapi-Chr4:122108115 Dapi4g02026 Dapi-Chr4:122111217 tandem