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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi7g00039 ATGGCAAGTACTCATCATCAGGGTATCCACGGCAATCTACTTGAAATAACCGTTGTTAGCTGTTGTAAACTAAAGGACACGGAATGGATTTCACGGCAAGATCCTTACGTCGGTATCGAATACGGTAGCAGTAAATCGACCACTCGTACCTGTACAGATGGAGGCAAGAACCCTACGTTTCAAGAGAAGTTTGTTTTTACCCTTATTGAAGGATTGAGAGATCTCAATGTTTCGGTTTGGAATAGCAATACAGTTACACATGATGATTTTATCGGTGGTGGAAAGATTCCATTGGCAAAAGCTCTTTCTCAGGGATTTGATGATAGTAGCTGGCCGTTACAGAGTAATACTGGCAGGCACGCCGGAGAAGTCCGAATAATAATGCATTATACTAACGGAAATAAACCATCAAAAGATTCTGCTCAGAAACCATCAAAGGGTTTTACACCATCAGCACCGATGTCCATGTACCCTGCTGCACCCCCACCGGCTTACCCTCCACCAGGTGGGGCTTATCCTCCACCAGGTGGGGCTTATCCTCCACCCGGTGGTGCTTATCCTCCACCCTACGCAGCATATCCACATAATTCAGGTGGTTATCCACCGGCACCTTACCCACCTCAGCCGGTTACTTACCCTTCTCACCCGTATCCACCTAATCCAGCTTATGGATCACATTATCCCCCTGGTTCTCCATTCCCTGGAATGTATCCTCCTCCGCCGCCTTATTGA 732 47.13 MASTHHQGIHGNLLEITVVSCCKLKDTEWISRQDPYVGIEYGSSKSTTRTCTDGGKNPTFQEKFVFTLIEGLRDLNVSVWNSNTVTHDDFIGGGKIPLAKALSQGFDDSSWPLQSNTGRHAGEVRIIMHYTNGNKPSKDSAQKPSKGFTPSAPMSMYPAAPPPAYPPPGGAYPPPGGAYPPPGGAYPPPYAAYPHNSGGYPPAPYPPQPVTYPSHPYPPNPAYGSHYPPGSPFPGMYPPPPPY 243
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi7g00039 243 PANTHER CONSERVED SERINE PROLINE-RICH PROTEIN (AFU-ORTHOLOGUE AFUA-2G01790) 4 242 IPR052981 -
Dapi7g00039 243 SMART C2-3c 13 110 IPR000008 -
Dapi7g00039 243 MobiDBLite consensus disorder prediction 170 224 - -
Dapi7g00039 243 MobiDBLite consensus disorder prediction 133 149 - -
Dapi7g00039 243 MobiDBLite consensus disorder prediction 199 224 - -
Dapi7g00039 243 ProSiteProfiles C2 domain profile. 1 112 IPR000008 -
Dapi7g00039 243 MobiDBLite consensus disorder prediction 131 153 - -
Dapi7g00039 243 MobiDBLite consensus disorder prediction 170 189 - -
Dapi7g00039 243 Pfam C2 domain 13 104 IPR000008 -
Dapi7g00039 243 SUPERFAMILY C2 domain (Calcium-lipid-binding domain, CaLB) 10 132 IPR035892 -
Dapi7g00039 243 Gene3D C2 domain 12 132 IPR035892 -
Dapi7g00039 243 CDD C2 14 111 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi7g00039 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
73918 Dapi12g01057 Dapi7g00039
76477 Dapi18g00651 Dapi7g00039
80937 Dapi28g00987 Dapi7g00039
81319 Dapi2g00883 Dapi7g00039
251491 Dapi7g00039 Dapi23g00046
386884 Dapi23g00046 Dapi7g00039
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr18:14974153 Dapi7g00039 Dapi-Chr7:895493 wgd
Dapi Dapi-Chr2:20538846 Dapi7g00039 Dapi-Chr7:895493 wgd
Dapi Dapi-Chr23:1392260 Dapi7g00039 Dapi-Chr7:895493 wgd