AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dapi7g00040 | ATGGAGATCGCCCCCGACGGAGTCGGAAACTTATCGGATTTTTCATCTGCTTCGACTGTATCTGTTAATAACAGTAATTCTTGGAGCAACAGGTACGATGAAGATGATGAAGATGAGGATGTTTGCCGGATCTGCCGGAATCCAGGAGACGCCGATAATCCTCTCCGATATCCGTGTGCTTGTAGCGGCAGTATTAAGTTTGTTCACCAGGACTGTCTTCTTCAGTGGCTTAATCACAGCAACGCTCGTCAGTGCGAGGTATGTAAGCATCCCTTTTCATTCTCCCCTGTATATGCTGAAAATGCCCCCGGAAGGCTTCCTTTTCAGGAATTTGTTATTGGGACAGCAATGAAAGCCTATAGTGTGATGCAGTTCTTCATACGTTTCATTTTTGTGATATCTGTATGGCTTTTAATCATACCTTTTATCACTTTCTGGATATGGCGATTCTCATTCATTAGGAGTTTTAATGAAGCCAGAAAAATTTTCTTAAGTCATATTTCAACTACACTCATTCTCACCGACTGTCTTCACGGGTTCCTACTCTCTGCAAGCATTGTGTTTATTTTTCTTGGTGCCACATCTTTAAGGGACTATTTTCGACATTTAAGAGAACTTGGGGGTCAGGAAGAGGACAGAGAGGAAGAATTAGATAGAAACGGTGCTCGACTTGCAAGGAGACAAGGTAACCGGAACCTTGTTGGTGAAGGGAATGGTGAAGATGTTGGCAGGGCCCACGCTATTGGTGGGGCTGGTCAGTTGATTAGAAGAAATGCAGAGAATGTTGCAGCCAGGTGGGAGATGCAAGCAGCTCGGCTCGAGGCACATGTAGAACAGATGTTTGATGGTTTGGATGACGGTGATGTTGTAGAGGATGTTCCTTTTGATGAACTGGTTGGTATGCAGGGGCCCGTGTTTCATTTGGTGGAAAATGCATTTACTGTTCTTGCAAGCAACATGATATTTCTTAGTGTTGTAGTACTGGTGCCCTTCCACCTAGGACGATTTATCCTCCATCAGTTATCATTTATTTTATCTTCTGCCATCGACCAAATGTTTTTGACTGTTGTACCAATCACAGAACAAGCTCTTTCATTAGCCAATATTACATTAAAAAACACACTTACTGCAGGCACAAATTTTACATCTGACAAAAATCCAAATGTAAATGATGTTGCTCTCGCTTCAGTTAGTTTTTTAAAAGGAGATTCCCGGCTATCTGATGCTGCAACTCTTGCAGTTGGATATATTTCGATTTTCACATTGATTACTTTATATTTAGGAGTTATAGCACTTATTAGGTACACCAGGGGCGAGCCCTTGACCATGGGGAGGTTTTATGGTATTACTTCAATTGCAGAAACAATCCCATCCATTTTTAGGCAGTTTGTAGCTGCAATGAGACATTTAATGACTATGATAAAGGTCGCTTTCCTATTGGTCATTGAGTTAGGAGTGTTCCCTCTAATGTGTGGATGGTGGTTAGATGTTTGTACTATAAGGATGTTTGGGAAGTCAATCAGTCAAAGAGTGGACTTCTTTTCAGTTTCTCCACTAGCAAGCTCATTGATTCATTGGCTTGTAGGGATTGCCTACATGCTGCAAATATCCATATTTGTTAGTCTTCTTCGTGGGGTTTTCCGGAATGGAGTCCTTTATTTTTTGCGGGATCCAGCTGATCCTAATTACAATCCATTTAGGGATTTAATTGATGATCCTGTGTATAAGCATGCTCGCCGGGTGCTCTTGTCAGTTGCTGTTTATGGGAGCTTAATTGTAATGCTGGTATTTTTGCCAGTTAAACTTGCTATGCTTGTAACTCCTTCTATTTTCCCTCTTGATATATTAGTATCTGACCCATTCACCGAGATTCCTGCTGACATGCTTCTTTTCCAAATTTGCATTCCCTTTGCTGTCGAGCATTTTAAGCTGCGGGCTACAATCAAAGCACTTCTGCACTATTGGTTTACTGCAGTTGGGTGGGCCCTCGGTTTAACAGATTACTTATTGCCCAGACTCGAAGACGCGGGTGGACAAGAAAATGAGAATGTTCCAGCAAGGCGGGACAGGATACTTGGTCAATTAGGTGATCAACTTGGGGGTCAACATCGAGCTGTAGCTGGATATTTGCCCCCCGAAGAATTGAGCCAAGTTAGTTTTGCAGAAGAAGAAATTGACAATGAGCGATCTGATTCAGAGAGGTATATGTTTGTTCTGTGTATTGTGCTGCTTTTATTGGCGGCTTGGATGACATTGCTGATCTTCAATTCTGCTTTAATTGTGGTGCCCGTATCCCTAGGACGAGTCTTGTTCAATGCAATTCCCCTTCTCCCTATCACACATGGTGTCAAATGCAATGACATATATGCGTTTGTTATTGGAAGTTATGTCATCTGGACAGCACTGGTGGGCATAAGGTATTGTATTGACCAAATTAGAACTAAGAGAGCTACAGTTTTACTAGGTCAAATTTGGATATGGTGTTCGATTGTTTTCAAGAGTACTGTACTATTGTTAATTTGGATTTTTGTTATCCCAGTGTTGATTGGTCTGCTATTTGAACTTTTGGTTATTGTACCAATGAGGGTGCCTGTGGACGAAAGCCCGGTGTTTCTGTTGTATCAGGATTGGGCTCTTGGACTTGTTTTCCTTAAGATTTGGACTCGACTGGTAATGCTGGATCATGTGATGCCTCTGATGGATGACAGCTGGCGAGTGAAATTCGAGAGAGTAAGGGAAGATGGTTTCTCAAGGCTACAAGCGTTTTGGGTCCTACGAGAGATTGTGATCCCCATCATCATTAAACTTCTTACGGCTCTATGTGTCCCTTATGTCCTAGCCCGTGGGGTGTTTCCTGTATTTGGGTACCCGTTAGTGTTTAACTCGGCTGTCTATAGATTTGCATGGCTCGGGTGCCTTGGTCTGAGTTTGCTGTGCTTTTGTGCCAAACGGTTCCATATGTGGTTCACCAACCTCCACAACTCGATTAGAGATGACCGATATTTGATTGGTCGAAGGCTTCATAACTTTGGGGAAGATAATACAAAACCTGAGTTTGAGTCTGCAAATGTGTTGGATGCACGGGACACTGATGTGGGTTTGAGGCATAGGCGGAATGTTCCAGTCGAGGGTTGA | 3135 | 42.71 | MEIAPDGVGNLSDFSSASTVSVNNSNSWSNRYDEDDEDEDVCRICRNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHPFSFSPVYAENAPGRLPFQEFVIGTAMKAYSVMQFFIRFIFVISVWLLIIPFITFWIWRFSFIRSFNEARKIFLSHISTTLILTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQEEDREEELDRNGARLARRQGNRNLVGEGNGEDVGRAHAIGGAGQLIRRNAENVAARWEMQAARLEAHVEQMFDGLDDGDVVEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLSVVVLVPFHLGRFILHQLSFILSSAIDQMFLTVVPITEQALSLANITLKNTLTAGTNFTSDKNPNVNDVALASVSFLKGDSRLSDAATLAVGYISIFTLITLYLGVIALIRYTRGEPLTMGRFYGITSIAETIPSIFRQFVAAMRHLMTMIKVAFLLVIELGVFPLMCGWWLDVCTIRMFGKSISQRVDFFSVSPLASSLIHWLVGIAYMLQISIFVSLLRGVFRNGVLYFLRDPADPNYNPFRDLIDDPVYKHARRVLLSVAVYGSLIVMLVFLPVKLAMLVTPSIFPLDILVSDPFTEIPADMLLFQICIPFAVEHFKLRATIKALLHYWFTAVGWALGLTDYLLPRLEDAGGQENENVPARRDRILGQLGDQLGGQHRAVAGYLPPEELSQVSFAEEEIDNERSDSERYMFVLCIVLLLLAAWMTLLIFNSALIVVPVSLGRVLFNAIPLLPITHGVKCNDIYAFVIGSYVIWTALVGIRYCIDQIRTKRATVLLGQIWIWCSIVFKSTVLLLIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLVFLKIWTRLVMLDHVMPLMDDSWRVKFERVREDGFSRLQAFWVLREIVIPIIIKLLTALCVPYVLARGVFPVFGYPLVFNSAVYRFAWLGCLGLSLLCFCAKRFHMWFTNLHNSIRDDRYLIGRRLHNFGEDNTKPEFESANVLDARDTDVGLRHRRNVPVEG | 1044 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dapi7g00040 | 1044 | CDD | RING-CH-C4HC3-MARCH6 | 41 | 90 | - | - | |
| Dapi7g00040 | 1044 | SMART | ringv-2 | 41 | 89 | IPR011016 | GO:0008270(InterPro) | |
| Dapi7g00040 | 1044 | Pfam | RING-variant domain | 42 | 88 | IPR011016 | GO:0008270(InterPro) | |
| Dapi7g00040 | 1044 | SUPERFAMILY | RING-U-box | 36 | 93 | - | - | |
| Dapi7g00040 | 1044 | ProSiteProfiles | Zinc finger RING-type profile. | 42 | 89 | IPR001841 | - | |
| Dapi7g00040 | 1044 | Coils | Coil | 256 | 276 | - | - | |
| Dapi7g00040 | 1044 | Gene3D | Zinc-RING finger domain, C3HC4 (zinc finger) | 25 | 100 | IPR013083 | - | |
| Dapi7g00040 | 1044 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 34 | 95 | IPR011016 | GO:0008270(InterPro) | |
| Dapi7g00040 | 1044 | PANTHER | SSM4 PROTEIN | 31 | 1017 | - | GO:0030176(PANTHER)|GO:0030433(PANTHER) | |
| Dapi7g00040 | 1044 | FunFam | Probable E3 ubiquitin ligase SUD1 | 27 | 100 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dapi7g00040 | K10661 | E3 ubiquitin-protein ligase MARCH6 [EC:2.3.2.27] |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 73915 | Dapi12g01051 | Dapi7g00040 | |
| 78930 | Dapi22g00596 | Dapi7g00040 | |
| 80936 | Dapi28g00983 | Dapi7g00040 | |
| 82444 | Dapi6g00825 | Dapi7g00040 | |
| 251492 | Dapi7g00040 | Dapi23g00047 | |
| 386885 | Dapi23g00047 | Dapi7g00040 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Dapi | Dapi-Chr1:59663922 | Dapi7g00040 | Dapi-Chr7:902560 | dispersed | |
| Dapi | Dapi-Chr28:80656348 | Dapi7g00040 | Dapi-Chr7:902560 | dispersed | |
| Dapi | Dapi-Chr7:902560 | Dapi8g01399 | Dapi-Chr8:41646475 | dispersed | |
| Dapi | Dapi-Chr22:9083858 | Dapi7g00040 | Dapi-Chr7:902560 | wgd | |
| Dapi | Dapi-Chr23:1425788 | Dapi7g00040 | Dapi-Chr7:902560 | wgd | |
| Dapi | Dapi-Chr6:13206235 | Dapi7g00040 | Dapi-Chr7:902560 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Dapi26g00716 | DST,WGDA | 67 | 135 | HMGR gene family | AT4G34100 | 36.232 | 1.26e-09 | 58.5 | |
| Dapi24g01261 | ACH,DST | 68 | 129 | HMGR gene family | AT4G34100 | 41.935 | 1.65e-10 | 59.7 | |
| Dapi23g00047 | ACH,DST,WGDA | 67 | 1108 | HMGR gene family | AT4G34100 | 71.756 | 0.0 | 1489.0 | |
| Dapi28g00983 | ACH,DST | 36 | 1107 | HMGR gene family | AT4G34100 | 73.247 | 0.0 | 1569.0 | |
| Dapi27g01437 | ACH | 68 | 131 | HMGR gene family | AT4G34100 | 42.188 | 2.95e-09 | 56.6 | |
| Dapi18g02429 | DST | 198 | 632 | HMGR gene family | AT1G76490 | 79.176 | 0.0 | 719.0 | |
| Dapi18g02855 | ACH,DST | 68 | 129 | HMGR gene family | AT4G34100 | 38.71 | 8.88e-09 | 53.9 | |
| Dapi1g01162 | . | 41 | 118 | HMGR gene family | AT4G34100 | 74.699 | 6.85e-33 | 118.0 | |
| Dapi1g01163 | . | 113 | 777 | HMGR gene family | AT4G34100 | 62.908 | 0.0 | 780.0 | |
| Dapi12g01051 | ACH,DST | 36 | 1108 | HMGR gene family | AT4G34100 | 73.18 | 0.0 | 1567.0 | |
| Dapi10g00145 | . | 68 | 141 | HMGR gene family | AT4G34100 | 33.784 | 9.28e-10 | 57.4 | |
| Dapi30g02253 | DST | 51 | 632 | HMGR gene family | AT1G76490 | 73.413 | 0.0 | 873.0 | |
| Dapi30g01900 | DST | 68 | 125 | HMGR gene family | AT4G34100 | 41.379 | 2.87e-10 | 58.2 | |
| Dapi7g02607 | ACH,DST,WGDA | 68 | 131 | HMGR gene family | AT4G34100 | 35.385 | 4.49e-10 | 57.0 | |
| Dapi25g00595 | . | 68 | 129 | HMGR gene family | AT4G34100 | 41.935 | 2.82e-10 | 59.3 | |
| Dapi11g01183 | . | 68 | 131 | HMGR gene family | AT4G34100 | 42.188 | 2.57e-09 | 57.0 | |
| Dapi32g00274 | DST,WGDA | 81 | 131 | HMGR gene family | AT4G34100 | 39.216 | 2.88e-08 | 50.8 | |
| Dapi6g00825 | ACH,DST | 67 | 1070 | HMGR gene family | AT4G34100 | 71.841 | 0.0 | 1462.0 | |
| Dapi14g01938 | DST | 68 | 125 | HMGR gene family | AT4G34100 | 41.379 | 3.22e-10 | 58.2 | |
| Dapi14g02265 | DST | 51 | 632 | HMGR gene family | AT1G76490 | 73.756 | 0.0 | 872.0 | |
| Dapi5g01001 | . | 489 | 630 | HMGR gene family | AT1G76490 | 70.423 | 6.80e-63 | 201.0 | |
| Dapi5g01002 | DST | 489 | 584 | HMGR gene family | AT1G76490 | 83.333 | 8.31e-51 | 167.0 | |
| Dapi5g01003 | DST | 339 | 447 | HMGR gene family | AT1G76490 | 65.138 | 4.00e-47 | 158.0 | |
| Dapi5g01005 | . | 489 | 633 | HMGR gene family | AT1G76490 | 72.414 | 6.96e-65 | 207.0 | |
| Dapi5g01006 | DST | 71 | 632 | HMGR gene family | AT1G76490 | 67.082 | 0.0 | 778.0 | |
| Dapi14g00681 | DST | 68 | 129 | HMGR gene family | AT4G34100 | 40.323 | 1.99e-10 | 58.9 | |
| Dapi21g01031 | DST | 90 | 632 | HMGR gene family | AT1G76490 | 69.245 | 0.0 | 776.0 | |
| Dapi21g01030 | DST | 338 | 447 | HMGR gene family | AT1G76490 | 66.364 | 1.16e-48 | 162.0 | |
| Dapi21g01029 | DST | 489 | 630 | HMGR gene family | AT1G76490 | 71.831 | 7.69e-64 | 204.0 | |
| Dapi20g01783 | ACH,DST,WGDA | 68 | 118 | HMGR gene family | AT4G34100 | 36.538 | 3.89e-09 | 53.9 | |
| Dapi22g01993 | DST | 83 | 632 | HMGR gene family | AT1G76490 | 73.188 | 0.0 | 816.0 | |
| Dapi9g00578 | . | 68 | 130 | HMGR gene family | AT4G34100 | 41.27 | 5.75e-10 | 58.2 | |
| Dapi26g00130 | . | 68 | 136 | HMGR gene family | AT4G34100 | 37.681 | 8.20e-11 | 60.8 | |
| Dapi21g00152 | . | 68 | 142 | HMGR gene family | AT4G34100 | 36.0 | 3.15e-10 | 58.5 | |
| Dapi8g01399 | ACH,DST | 68 | 129 | HMGR gene family | AT4G34100 | 41.935 | 1.06e-10 | 60.1 | |
| Dapi10g01712 | DST | 51 | 632 | HMGR gene family | AT1G76490 | 69.449 | 0.0 | 832.0 | |
| Dapi16g00273 | DST,WGDA | 68 | 131 | HMGR gene family | AT4G34100 | 36.923 | 2.77e-09 | 55.5 | |
| Dapi5g00104 | . | 68 | 142 | HMGR gene family | AT4G34100 | 36.0 | 3.92e-10 | 58.9 | |
| Dapi7g00040 | ACH,DST,WGDA | 67 | 1108 | HMGR gene family | AT4G34100 | 70.992 | 0.0 | 1482.0 | |
| Dapi30g00467 | ACH,DST | 68 | 129 | HMGR gene family | AT4G34100 | 37.097 | 3.83e-09 | 55.1 | |
| Dapi30g00704 | DST | 68 | 129 | HMGR gene family | AT4G34100 | 40.323 | 1.99e-10 | 58.9 | |
| Dapi4g01847 | ACH,DST,WGDA | 68 | 118 | HMGR gene family | AT4G34100 | 36.538 | 3.89e-09 | 53.9 | |
| Dapi22g00596 | ACH,DST | 67 | 1070 | HMGR gene family | AT4G34100 | 71.841 | 0.0 | 1466.0 | |
| Dapi6g02007 | DST | 285 | 632 | HMGR gene family | AT1G76490 | 83.333 | 0.0 | 610.0 | |
| Dapi2g03302 | DST | 198 | 632 | HMGR gene family | AT1G76490 | 79.176 | 0.0 | 719.0 | |
| Dapi2g03675 | ACH,DST | 68 | 129 | HMGR gene family | AT4G34100 | 38.71 | 8.24e-09 | 54.7 | |
| Dapi14g00445 | ACH,DST | 68 | 129 | HMGR gene family | AT4G34100 | 37.097 | 3.83e-09 | 55.1 | |
| Dapi26g01721 | DST | 51 | 632 | HMGR gene family | AT1G76490 | 68.647 | 0.0 | 829.0 | |
| Dapi17g01265 | WGDA | 41 | 1107 | HMGR gene family | AT4G34100 | 74.214 | 0.0 | 1572.0 |