AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi7g00046 ATGATAAATGAAGAAATCAAATGCGGATGCAATGCGTTCTTCGCAATCTTCTTCGCCACATGTTTTCTGGTCACATATGCTTCAGCGCTCAAGGAAGGACAAACGTGCGTAGATAATAGCAATTGTGACTCAGGGTTACATTGTGAGGCTTGTGTTGCAGACGGCAATATTCGACCTCGATGTACTCGTATTCAGCCTATCAGTCCATTTTCTAAGGTGAAAGGATTGCCGTTCAATCGGTACTCGTGGTTAACGACACATAATGCCTTCGCGAAATTTGGAGAGAAGTCGGCTACTGGTTCCGTCGTTCTAGCTCCGACGAACCAGCAGGATTCTGTTACTTCTCAGCTCGATAATGGCGTGAGAGGGCTGATGCTTGATATGTATGACTTTGAGAATGACATTTGGTTATGCCATTCCTTTGGTGGCAAATGCTTCAACTACACAGCTTTTCAACCTGCTATTAATGTTCTGAAAGAGATTCAAGTTTTCCTAGAAAGGAATCCAACTGAAATCATAACCATAATCATTGAAGATTATGTTACCTCACCAAACGGTCTAACTAAGGTCTTCAATGCTGCTGGCTTGAGGAAATACTGGTTTCCAGCAGCCCAAATGCCAAGTGATGGCAGGGACTGGCCCACACTTGACTCTATGGTCCGCCAAAATCACCGTTTGGTAGTTTTCACTTCAAAATCTTCTAAACAGGCTACTGAAGGGATTGCATATGAGTGGAAGTACTTGGTTGAAAATCAATATGGAACTGTCGGGATGAAAAGTGGTTTATGCCCTAACCGTGCTGAGTCAGCAGCAATGAACACTACATCAAGATCACTGGTTTTAATGAACTATTTCCCGGATACCCCAGATCTTACCCAAGCCTGCAAGCACAATTCAGACCCATTAATAAGTATGGTGAATACATGCCATGATGTAGCTGGTAAACGTTGGCCAAATTTCATTACTGTTGACTTTTACAAGAGGAGTAATGGTGGGGGTGCACCTGCTGCTGTAGATATGGCTAACGGGCAGCTGGTTTGTGGGTGTAACACCATTGCAGCATGCAGGCCAGGCATGACCTATGGAGCCTGTGGCCTCCCAGAGGCTGGGGCTGCTCCAACCCCAGCTTCAGCATTAAAAAGCTCCGGGAACGCGGGTGATCAACCGGGTCAACTTGGATGGCTGTTTGGGTCAGGTTTGATGGCTGTAGCCTTGTGTTTTTAA 1224 45.42 MINEEIKCGCNAFFAIFFATCFLVTYASALKEGQTCVDNSNCDSGLHCEACVADGNIRPRCTRIQPISPFSKVKGLPFNRYSWLTTHNAFAKFGEKSATGSVVLAPTNQQDSVTSQLDNGVRGLMLDMYDFENDIWLCHSFGGKCFNYTAFQPAINVLKEIQVFLERNPTEIITIIIEDYVTSPNGLTKVFNAAGLRKYWFPAAQMPSDGRDWPTLDSMVRQNHRLVVFTSKSSKQATEGIAYEWKYLVENQYGTVGMKSGLCPNRAESAAMNTTSRSLVLMNYFPDTPDLTQACKHNSDPLISMVNTCHDVAGKRWPNFITVDFYKRSNGGGAPAAVDMANGQLVCGCNTIAACRPGMTYGACGLPEAGAAPTPASALKSSGNAGDQPGQLGWLFGSGLMAVALCF 407
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi7g00046 407 SUPERFAMILY PLC-like phosphodiesterases 75 346 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Dapi7g00046 407 PANTHER UNCHARACTERIZED 40 355 IPR051057 GO:0008081(PANTHER)
Dapi7g00046 407 CDD PI-PLCc-At5g67130-like 68 342 - -
Dapi7g00046 407 Gene3D Phosphatidylinositol (PI) phosphodiesterase 69 333 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Dapi7g00046 407 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 77 185 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi7g00046 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
76482 Dapi18g00675 Dapi7g00046
251496 Dapi7g00046 Dapi23g00055
386889 Dapi23g00055 Dapi7g00046
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr30:15813055 Dapi7g00046 Dapi-Chr7:1051684 dispersed
Dapi Dapi-Chr30:19921886 Dapi7g00046 Dapi-Chr7:1051684 dispersed
Dapi Dapi-Chr14:16187180 Dapi7g00046 Dapi-Chr7:1051684 wgd
Dapi Dapi-Chr18:15787517 Dapi7g00046 Dapi-Chr7:1051684 wgd
Dapi Dapi-Chr2:19754944 Dapi7g00046 Dapi-Chr7:1051684 wgd
Dapi Dapi-Chr23:1553196 Dapi7g00046 Dapi-Chr7:1051684 wgd
Dapi Dapi-Chr30:15750760 Dapi7g00046 Dapi-Chr7:1051684 wgd