AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi7g00057 ATGGTACCCTCAAAACACATTCTTCCTGTAGCTAGACCAGACCCCGAAGTTGTTGCCATGCTTACGTCTGGACTTACAGCGTCGATTTCTCTAGAAAAGGCAGCACAAATGCAGTCTGGAGAGACGGTTCTTGTCACTGCTGCTGCCGGAGGGACTGGGCAATTTGCAGTTCAGCTTGCTAAATTAGCTGGAAACAAAGTGATAGCAACTTGTGGAGGTAAAGATAAGGCTATACTTCTAAGAGATTTGGGAGTTGATCGAGTCATCGACTATAAGGAAGAATCTATCAAAGACGTTCTTAAGAAGGAATTCCCAAAAGGCGTTGATATTGTTTATGAATCTGTTGGTGGTGATATGTTTGATACATGTTTCAATGCGTTAGCGGTTTATGGACGGATGGTGGTCATTGGAATGATTTCTCAGTATCAAGGAGAGCATGGATGGAAACCACGGAACTACACGGGATTATGCGAGAAACTCTTAGCAAAAAGTCAAACTGTGGCTGGTTTTTTTCTTTCGCAATATGATGATTTGTGGCAACAACATCTTGATAATCTGGTTCACCTTTTCTCTGTGGGAAAACTAAAGGTTGCAATAGACCCTAAAAGTTTTGTGGGCATTCAATCCGTTGTTAATGCAGTTGAATATCTCCATTCTGGTAAAAGTATTGGCAAGGTGGTTGTTTGCGTTGACCCGAGTTTCAGTCAACAAACAGCTAAGCTTTAA 726 41.87 MVPSKHILPVARPDPEVVAMLTSGLTASISLEKAAQMQSGETVLVTAAAGGTGQFAVQLAKLAGNKVIATCGGKDKAILLRDLGVDRVIDYKEESIKDVLKKEFPKGVDIVYESVGGDMFDTCFNALAVYGRMVVIGMISQYQGEHGWKPRNYTGLCEKLLAKSQTVAGFFLSQYDDLWQQHLDNLVHLFSVGKLKVAIDPKSFVGIQSVVNAVEYLHSGKSIGKVVVCVDPSFSQQTAKL 241
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi7g00057 241 FunFam Prostaglandin reductase 2 19 197 - -
Dapi7g00057 241 ProSitePatterns Quinone oxidoreductase - zeta-crystallin signature. 40 61 IPR002364 GO:0008270(InterPro)|GO:0016491(InterPro)
Dapi7g00057 241 SMART PKS-ER-names-mod 1 228 IPR020843 GO:0016491(InterPro)
Dapi7g00057 241 Gene3D - 19 197 - -
Dapi7g00057 241 Gene3D - 13 228 - -
Dapi7g00057 241 Pfam Zinc-binding dehydrogenase 51 184 IPR013149 -
Dapi7g00057 241 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 16 194 IPR036291 -
Dapi7g00057 241 ProSitePatterns TonB-dependent receptor (TBDR) proteins signature 1. 1 48 IPR010916 -
Dapi7g00057 241 PANTHER SHORT-CHAIN DEHYDROGENASE-REDUCTASE 1 232 IPR051397 GO:0005739(PANTHER)|GO:0016491(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi7g00057 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr23:1690170 Dapi7g00057 Dapi-Chr7:1189611 dispersed
Dapi Dapi-Chr7:1189611 Dapi8g00833 Dapi-Chr8:16581640 dispersed
Dapi Dapi-Chr7:1168769 Dapi7g00057 Dapi-Chr7:1189611 tandem