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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi7g00092 ATGGCCACTGTGTGCCACCAGTTTCCGTCAGGGGAAATGGCGGCCGGTGACGGCGATGGGTTTGGTTCCGGTGAAGTGACGTCATCTTCCGGCGGTGAGGATTATGATCAAGATGGGTCTGATTTGGTAGCTTTGAAGATATGTGTGTTGGGTGATAATCAAATCGGCAAAACAAGCTTCTTGGCAAAGTATGTTGGGGAAGAAAAGATTAAGGAAGAATTAGAAGCTAAAAGAATAAATCACATGGATAAAACACTAAGCATTAGAGGAGCCAGAATTTCCTACAGCATCTGGGAAGTGAGTGGTGATGCATTATATCCAGATGGTGATTCAAGGACTCTGATTTCTTCAGCTTGTAAGGACTCCGTTGCTATATTTTTCATGTTTGACCTAACAAGTCGTCGTACCCTTTCTAGTGTTATCAATTGGCACCGACAAGCTAGGAATTATAATCAGACTGCAATTCCAATAATGGTTGGGAGCAAGTTTGACGAATATGTCCAGCTTCCGTTGGATTTACAATGGACGATTGCAAGTGAGGCGAGAGCATACGCGAAGGCCTTAAATGCGACCTTGTTCTTCTCTAGTGCATCTTACAATATTAACGTAAATAAAATTTTCAAGTTCGCGACTGCAAAGCTATTTGATTTGCCATGGACTTTGGAACGTAATCTTACGATCGGTGAGCCTATTATTGATTTCTAG 705 42.41 MATVCHQFPSGEMAAGDGDGFGSGEVTSSSGGEDYDQDGSDLVALKICVLGDNQIGKTSFLAKYVGEEKIKEELEAKRINHMDKTLSIRGARISYSIWEVSGDALYPDGDSRTLISSACKDSVAIFFMFDLTSRRTLSSVINWHRQARNYNQTAIPIMVGSKFDEYVQLPLDLQWTIASEARAYAKALNATLFFSSASYNINVNKIFKFATAKLFDLPWTLERNLTIGEPIIDF 234
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi7g00092 234 Gene3D - 36 223 IPR027417 -
Dapi7g00092 234 PANTHER - 43 233 - GO:0003924(PANTHER)|GO:0005525(PANTHER)
Dapi7g00092 234 SMART rab-sub-5 45 217 - -
Dapi7g00092 234 ProSiteProfiles small GTPase Rab1 family profile. 34 234 - -
Dapi7g00092 234 Pfam Ras family 46 213 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Dapi7g00092 234 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 226 IPR027417 -
Dapi7g00092 234 PRINTS Transforming protein P21 ras signature 192 214 - -
Dapi7g00092 234 PRINTS Transforming protein P21 ras signature 45 66 - -
Dapi7g00092 234 PRINTS Transforming protein P21 ras signature 86 108 - -
Dapi7g00092 234 PRINTS Transforming protein P21 ras signature 152 165 - -
Dapi7g00092 234 FunFam Septum-promoting GTP-binding protein 1 35 224 - -
Dapi7g00092 234 MobiDBLite consensus disorder prediction 1 35 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi7g00092 K07976 Rab family, other
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Event-related genes

Select Gene_1 Gene_2 Event_name
251527 Dapi7g00092 Dapi23g00115
386920 Dapi23g00115 Dapi7g00092
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr25:6015265 Dapi7g00092 Dapi-Chr7:1745399 dispersed
Dapi Dapi-Chr7:1745399 Dapi9g00281 Dapi-Chr9:5114726 dispersed
Dapi Dapi-Chr16:79177880 Dapi7g00092 Dapi-Chr7:1745399 wgd
Dapi Dapi-Chr23:2407306 Dapi7g00092 Dapi-Chr7:1745399 wgd