AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi7g00162 ATGGATGAAATACCAGGATCAACCGGGACCAGTGCAGGGTTTGCTCTGAGGCTCGGCCAAATCATCTTCTCGACCGCTTCGCTTTTGTTCATGTTGCTCGGCGTTCAGTTTTACAGTTACACATCTTTTTGCTTCTTGGTGACAATTATGGGTTTGGTTATTCCATGGAGTTTTGCATTAGCATTGCTTGATGGATATTCGGTTATTGTAACGTGCCCAATTCGACAAAAGGGGATATTGTTCATAATTGTTGTAGGAGATTGGTTGTTATCGACATTGGCACTCGCTGCCGCTTGTTCTGCCGCCAGCGTGGTGGAGGTCTTGCTGACGGCGGATGGGTCCGTTTGCCTTCCAAAAATGTGTAGCCGGTATTTGATTTCGACTGTGTTTGCTTTCTTGTCATGGTTTTTGTCTATGGCTTCTTCTTTGTTTAATATGTGGATTCTTCCATCTTTGTGA 459 44.66 MDEIPGSTGTSAGFALRLGQIIFSTASLLFMLLGVQFYSYTSFCFLVTIMGLVIPWSFALALLDGYSVIVTCPIRQKGILFIIVVGDWLLSTLALAAACSAASVVEVLLTADGSVCLPKMCSRYLISTVFAFLSWFLSMASSLFNMWILPSL 152
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi7g00162 152 Pfam Casparian strip membrane protein domain 8 137 IPR006702 -
Dapi7g00162 152 PANTHER CASP-LIKE PROTEIN 5B3 1 151 IPR045009 GO:0016020(PANTHER)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi7g00162 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
251568 Dapi7g00162 Dapi23g00179
386961 Dapi23g00179 Dapi7g00162
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr26:26074421 Dapi7g00162 Dapi-Chr7:3271376 dispersed
Dapi Dapi-Chr30:17888535 Dapi7g00162 Dapi-Chr7:3271376 dispersed
Dapi Dapi-Chr7:3271376 Dapi8g00773 Dapi-Chr8:15833244 dispersed
Dapi Dapi-Chr23:3771167 Dapi7g00162 Dapi-Chr7:3271376 wgd