AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi7g00180 ATGGCTTCAAGTTCTGAAATAGGGCTTGCAGCAGCCATAAATATCCTCACCGCATTTGCGTTTTTGGTAGCATTTGCTATACTTCGGATTCAGCCGCTAAACGATAGGGTTTATTTTCCGAAGTGGTATTTGAAGGGATTAAGGAACAATCCACTTCAATCTGGTGCATTTGTTCAAAAGTTTGTGAACTTGGATTTTAGATCATATTTGAGGTTTCTGAACTGGATGCCTGCTGCTCTGCACATGCCAGAGCCTGAGCTTATTGATCATGCTGGATTGGATTCTGTTGTTTACTTGAGAATTTACTTGACAGGGCTCAAAATATTTGTTCCAATTGCATGCCTTGCTTTCACAGTCATGGTGCCAGTGAATTGGACTAATAGGACTTTGGAGCAGTCTAAATTAACATACAGTGACATAGATAAACTTTCAATATCCAACATTCCCGACGGATCAAACAGGTTCTGGACTCATTTAGTCATGGCATACGCTTTTACCTTTTGGACATGCTATATTTTAAAAAGGGAGTATGAAATAATTGCATCAATGAGGTTGCATTTTATTGCTTCAGAACAACGACGGCCTGATCAGTTTACTGTGCTTGTGAGAAATGTGCCACCAGACCCTGATGAGACTGTCAATGAACTTGTGGAGCACTTTTTTCTTGTTAACCATCCGGATCATTATTTATCTCATCAGGTTGTTTACAATGCAAATTCGCTATCCAGTTTGAGACCATCAATGAGGACCGGATATCTTGGCCTGTGCGGGAAGAGTGTGGATGCTATTGATTATTATCAATCTGAGATGGATAAACTATCCAAAGAAATCGGTAAAGAGAGGGAAAAGATTACGACAAGCTCCAAGTATGTCATGCCAGCTGCATTTGTTTCTTTTAAAACACGTTGGGGGGCTGCTGTTTGTGCACAAACTGAACAATCAAGAAACCCGACTATTTGGTTAACTGAGTGGGCCCCAGAACCCCGTGATGTTTACTGGGATAATCTTGCAATTCCTTTTGTTTCGCTCACAATTAGAAGACTTATAATTGCAGTTGCTTTTTTCTTCCTTACATTCTTCTTCATGATCCCAATAGCATTTGTACAGTCACTTGCAAACATTGATGGGATAGTGAAAGCAGCTCCTTTCATGCAGGGAATTATGGAAGTGAAATTTGTAACGTCTTTTATTCAAGGTGTTCTTCCAGGAATTGCTTTGAAGATTTTCCTCATCATTCTACCTTCAATCTTGATGATGATGTCTAAATTTGAAGGATTTACCTCAATCTCTGCTTTAGAGAGGAGATCTGCAACAAGATATTATATTTTCCAATTTATTAATGTTTTTCTTGGAAGCATAATTACTGGGACTGCATTTCAACAGCTAAATAACTTCATCCACCAGTCTGCAAACGAGATCCCAGTGACAATTGGAGCATCTATACCTATGAAAGCAACCTTCTTTATAACCTATATCATGGTAGATGGATGGGCTGGAGTTGCAGGAGAGATATTGAGAATAAAACCGTTAATATTTTATCACTTAAAGAATTTTCTTCTAGTGAAAACTGAAAAAGACAGAGAAGAAGCAATGAATCCTGGGAGTTTGTCTTTTAACACGGGCGAACCCCAAATCCAGCTGTACTTCTTACTTGGGCTTGTTTATGCTGTTGTCACCCCGATTCTGCTACCTTTTATAGTTGTGTTCTTTGGATTGGCTTATGTCGTATACCGTCATCAGATTATAAATGTGTATAATCAGCAATACGAGAGTGCAGGAGCTTTTTGGCCCGATGTTCATGGGCGGATCATAACTGCACTGATTGTTTCACAGTTGCTTTTGATGGGTTTGCTTAGCACAAAAGCGGCTGCTCAAAAGTATGTTTATGCTGATAGCCCGTGTCCTTTATCTTTACAGGAGGCTATGATGAAAGACACACTAGAACGAGCACGGGAGCCATGTTTAAATGTGAAGGACTATTTAGAAAAAGCGTATGCTCACCCGGTCTTTAATAATGAAAACAAATGGGATGGTAGTGATGATGGAGTTAGTGATGATGAGTTGCCCAAAGAACCCACTCTGGTCGCCACAAAACGTTCATCGAGAACAACCACACCAGCCCGAAGTCAACAGAGCGAGTCAACCCGAACATTGTTATGTGTTACAGACGAAAGGTCTTGTCCCTAA 2187 40.1 MASSSEIGLAAAINILTAFAFLVAFAILRIQPLNDRVYFPKWYLKGLRNNPLQSGAFVQKFVNLDFRSYLRFLNWMPAALHMPEPELIDHAGLDSVVYLRIYLTGLKIFVPIACLAFTVMVPVNWTNRTLEQSKLTYSDIDKLSISNIPDGSNRFWTHLVMAYAFTFWTCYILKREYEIIASMRLHFIASEQRRPDQFTVLVRNVPPDPDETVNELVEHFFLVNHPDHYLSHQVVYNANSLSSLRPSMRTGYLGLCGKSVDAIDYYQSEMDKLSKEIGKEREKITTSSKYVMPAAFVSFKTRWGAAVCAQTEQSRNPTIWLTEWAPEPRDVYWDNLAIPFVSLTIRRLIIAVAFFFLTFFFMIPIAFVQSLANIDGIVKAAPFMQGIMEVKFVTSFIQGVLPGIALKIFLIILPSILMMMSKFEGFTSISALERRSATRYYIFQFINVFLGSIITGTAFQQLNNFIHQSANEIPVTIGASIPMKATFFITYIMVDGWAGVAGEILRIKPLIFYHLKNFLLVKTEKDREEAMNPGSLSFNTGEPQIQLYFLLGLVYAVVTPILLPFIVVFFGLAYVVYRHQIINVYNQQYESAGAFWPDVHGRIITALIVSQLLLMGLLSTKAAAQKYVYADSPCPLSLQEAMMKDTLERAREPCLNVKDYLEKAYAHPVFNNENKWDGSDDGVSDDELPKEPTLVATKRSSRTTTPARSQQSESTRTLLCVTDERSCP 728
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi7g00180 728 Coils Coil 263 283 - -
Dapi7g00180 728 Pfam Late exocytosis, associated with Golgi transport 9 176 IPR032880 -
Dapi7g00180 728 PANTHER PROBABLE MEMBRANE PROTEIN DUF221-RELATED 7 635 IPR045122 GO:0005227(PANTHER)|GO:0005227(InterPro)|GO:0005886(PANTHER)
Dapi7g00180 728 Pfam Cytosolic domain of 10TM putative phosphate transporter 242 335 IPR027815 -
Dapi7g00180 728 MobiDBLite consensus disorder prediction 676 728 - -
Dapi7g00180 728 Pfam Calcium-dependent channel, 7TM region, putative phosphate 346 618 IPR003864 GO:0016020(InterPro)
Dapi7g00180 728 MobiDBLite consensus disorder prediction 696 721 - -
Dapi7g00180 728 MobiDBLite consensus disorder prediction 678 693 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi7g00180 K21989 calcium permeable stress-gated cation channel
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Dapi Dapi-Chr7:3577895 Dapi7g03299 Dapi-Chr7:122867733 dispersed
Dapi Dapi-Chr23:4129939 Dapi7g00180 Dapi-Chr7:3577895 transposed
Dapi Dapi-Chr23:4127412 Dapi7g00180 Dapi-Chr7:3577895 wgd